Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00949 ATGAATGTGCTAAAGATAGCGAAGCTTTTGTTAGATTCAGTTCAGAAGCATCATCCCTACCGGGTCCTTGAAGAACACTTCATTTCTCTGTTACGATCATGTAAGACAGCGGCGCTGCTTCAGAAAGTTCAAGCCCAGATAATCACCCACGGTTTCCAACACAATGAATATGTAGCTCCCAATCTGGTATCTGCATGGGCTGGTCTGAAGCGAATGGATTATGCCCGCCATCTGTTCGATCATTTTCCTGACCCAAAACTAGCCCTTTGGAATGCAACTTTCAGAGGGTATGTCCGCAATGAGTTTTACAGGGAAGTGATTTTCTTGTCTGGGAAAATGAAGAGCATGGACGTGAGACCCAACTGCTTCACCTTCCCTCTTGTCCTTAAATCATGTGCAAAGATCAGTGCGTTTGTCGAAGGTGAACAGATACATTGTGAGGTGATTAAGGGAGGGTTTGAAGGGAACCAATTCGTGGCAACTACGCTGATCGATGTGTACTCTGTTGGGAGGGCGATTGGGTCTGCGTACAAGGTGTTTGTTGGAATGCTTGAGAGAAATGTAGTTGCTTGGACTTCCATGATTAGTGGCTACATTTTGTGTAATGATGTGGTGTTTGCTCGCCGACTTTTCGACTTGGCACCAGAACGGGATGTCGTGCTTTGGAACATCATGGTTTCTGGTTATATTGAAATAGGGGACATGGGGGCTGCCAGAAAGCTGTTTGATGCAATGCCATACCGAGATGTGATGTCTTGGAATACAATGTTGAATGGGTATGCAAATAATGGAGACATTGAGGCTTGTGAGCAGCTGTTTGAAGAAATGCCTGAGCGGAATGTTTTCTCCTGGAATGGATTGATTGGGGCATATGCTCATAAGGGGTGTTTCTTTGAAGTATTGGGTTGTTTCAAACGAATGCTAATCGATGGCCTTGTTGTTCCCAACGATGCCACCCTCGTCACTGTGCTGTCCGCTTGTGCAAGATTAGGGGCTCTTGACTTGGGGAAGTGGGTGCATGTATATGCTGCAACAATCGGGTTTAAGGGGAGTATTTATGTTGGAAATGCATTAATAGACATGTATTCAAAATGCGGTGTAATCGAGAATGCAATGGAGGTTTTTGGAAGCATGGATTCAAAAGACGTTATTACTTGGAACTCTGTAATTTGTGGCTTGGCAACTCATGGATGTGGGGCGGATGCATTAAACTTGTTTCACCAGATGAAGATCACTGGCGTGAAGCCTGATGGAATCACGTTCATTGGGGTGCTGTGCTCCTGCACCCATCTTGGGTTAGTTGAAGAAGGCATCTCATATTTCAACTCAATGGTCCACGACTACTCAATTGTGCCTCAGATTGAGCATTATGGTTGTATGGTTGATCTATTTGGGCGAGCTGGACTTTTGGACCGAGCGATCGAGTTCGTGAAGAGGATGCCGATGGAAGCAGATGCTGTCATCTGGGCTGCTCTTCTAGGTGCATGCAGGATTCACAAAAACATTGATCTGGGTGAGTTAGCTCTTCAGAAACTCATTCAGCTTGAACCCAAGAACCCTGCAAACTATGTGATGCTATCAAATATATATGGAGATGTTGGGAGATGGAAAGACGTTGCCCGGTTGAAGATATTAATGAGGGACACCGGGTCCAAAAAATTGCCTGGATGCAGCTTGATTGAGGTGAATGATAGCGTAGTTGAGTTTTATTCCTTGGATGAGAGGCATTCCGAGAGCGAGGAAATCTATGGTGTGTTGAAGGGATTGATGAAATTGTTAAGATCATTTGGGTATGAACCAAATATTATGGAACTCCTGCAGGGATGA 1827 44.88 MNVLKIAKLLLDSVQKHHPYRVLEEHFISLLRSCKTAALLQKVQAQIITHGFQHNEYVAPNLVSAWAGLKRMDYARHLFDHFPDPKLALWNATFRGYVRNEFYREVIFLSGKMKSMDVRPNCFTFPLVLKSCAKISAFVEGEQIHCEVIKGGFEGNQFVATTLIDVYSVGRAIGSAYKVFVGMLERNVVAWTSMISGYILCNDVVFARRLFDLAPERDVVLWNIMVSGYIEIGDMGAARKLFDAMPYRDVMSWNTMLNGYANNGDIEACEQLFEEMPERNVFSWNGLIGAYAHKGCFFEVLGCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGVIENAMEVFGSMDSKDVITWNSVICGLATHGCGADALNLFHQMKITGVKPDGITFIGVLCSCTHLGLVEEGISYFNSMVHDYSIVPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIHKNIDLGELALQKLIQLEPKNPANYVMLSNIYGDVGRWKDVARLKILMRDTGSKKLPGCSLIEVNDSVVEFYSLDERHSESEEIYGVLKGLMKLLRSFGYEPNIMELLQG 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4885626 4888625 + CmoCh15G009490.1 Cmo15g00949 398457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00949 608 Gene3D Tetratricopeptide repeat domain 344 406 IPR011990 GO:0005515
Cmo15g00949 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Cmo15g00949 608 PANTHER - 198 266 - -
Cmo15g00949 608 Gene3D Tetratricopeptide repeat domain 246 343 IPR011990 GO:0005515
Cmo15g00949 608 Gene3D Tetratricopeptide repeat domain 407 559 IPR011990 GO:0005515
Cmo15g00949 608 Pfam PPR repeat family 381 428 IPR002885 -
Cmo15g00949 608 PANTHER - 229 310 - -
Cmo15g00949 608 PANTHER - 266 600 - -
Cmo15g00949 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 248 IPR002885 -
Cmo15g00949 608 PANTHER BNACNNG07920D PROTEIN 198 266 - -
Cmo15g00949 608 TIGRFAM PPR: pentatricopeptide repeat domain 252 281 IPR002885 -
Cmo15g00949 608 TIGRFAM PPR: pentatricopeptide repeat domain 220 245 IPR002885 -
Cmo15g00949 608 TIGRFAM PPR: pentatricopeptide repeat domain 282 316 IPR002885 -
Cmo15g00949 608 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Cmo15g00949 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Cmo15g00949 608 PANTHER - 26 230 - -
Cmo15g00949 608 Pfam E motif 499 561 IPR046848 -
Cmo15g00949 608 Gene3D Tetratricopeptide repeat domain 141 245 IPR011990 GO:0005515
Cmo15g00949 608 Gene3D Tetratricopeptide repeat domain 4 140 IPR011990 GO:0005515
Cmo15g00949 608 SUPERFAMILY TPR-like 260 537 IPR011990 GO:0005515
Cmo15g00949 608 Pfam PPR repeat 456 481 IPR002885 -
Cmo15g00949 608 Pfam PPR repeat 252 281 IPR002885 -
Cmo15g00949 608 Pfam PPR repeat 220 248 IPR002885 -
Cmo15g00949 608 Pfam PPR repeat 189 216 IPR002885 -
Cmo15g00949 608 Pfam PPR repeat 282 311 IPR002885 -
Cmo15g00949 608 PANTHER BNACNNG07920D PROTEIN 229 310 - -
Cmo15g00949 608 PANTHER BNACNNG07920D PROTEIN 266 600 - -
Cmo15g00949 608 PANTHER BNACNNG07920D PROTEIN 26 230 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00949 - - - mcha:111010545 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00866 Cmo-Chr7:4089757 Cmo15g00949 Cmo-Chr15:4885626 2.85E-148 dispersed
Cmo14g02084 Cmo-Chr14:15147249 Cmo15g00949 Cmo-Chr15:4885626 2.43E-146 dispersed
Cmo15g00949 Cmo-Chr15:4885626 Cmo13g00061 Cmo-Chr13:379271 5.98E-28 dispersed
Cmo18g01266 Cmo-Chr18:12346546 Cmo15g00949 Cmo-Chr15:4885626 2.61E-10 dispersed
Cmo15g00949 Cmo-Chr15:4885626 Cmo10g00608 Cmo-Chr10:2749382 2.17E-163 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g318 . . . Bda11g01155 Bpe13g01353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01155 . . . Bma06g00752 . . Cmo15g00949 . Cma15g00911 . Car15g00855 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013696 1 1 0 1 1 1 1 1 0 1 1 1 1 2 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00949 Cmo_Chr15 FPKM 10.211818 11.160183 9.578379 9.144547 12.085774 9.34911 11.346282 15.540724 14.319245 13.169662