Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00954 ATGAAAGGTCACCAATGGCGGCTTCTTCCTTTGCAAAAACAAACCCTTTATAAAGCTTGTTTTGGTAGAGCCATGGGTTACAATGATTTAGAGATGATAAGTAACCATTTCACAGTCGAGAGCTCGAATGAAAGTGATCATTATCAAGGAACAATCATGAGCTCCGCTAACCCTTTTTTCACTGACACCTTTTGTTTTGAAAAGTTTGATCATTTTAATGAAATTCCGAGCTGTGTTGCCCCAGCTGCTGCTCTTTGCTCCTCCGTGCCTCCAAATTACTCTTCGTTTCCTGCGCTTCACACAGATGGTTCCAAGAGCACGGGAGGAAGAAAGAGGAAAAGGGAAAATGAACGGGATGAGGAGAAGCCTAAAGGAGTGATTCATGTGAGAGCAAAACGAGGCCAAGCTACCGACAGTCACAGCTTAGCGGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGGCTGAGATTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTCATGTTAGATGTGATCATAAACTACATCCAATCTCTGCAGAATCAAATAGAGTTCCTCTCAATGAAGCTTTCGGTTGCTAGTCGGTACTATGACTTCAACAACAGCTCCGAGACCGATGAGATTGAGATAATGCAGGCAACAAATGGGTGTGGTTACATGGAAGAGATGGGCGGGAGGGTTGTAGTTAGAGAAGAAGAAGGGAATGGAGGGTCCTTTTACCACCACTCTACTTTGCCACCTCTCTAA 765 44.18 MKGHQWRLLPLQKQTLYKACFGRAMGYNDLEMISNHFTVESSNESDHYQGTIMSSANPFFTDTFCFEKFDHFNEIPSCVAPAAALCSSVPPNYSSFPALHTDGSKSTGGRKRKRENERDEEKPKGVIHVRAKRGQATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETDEIEIMQATNGCGYMEEMGGRVVVREEEGNGGSFYHHSTLPPL 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4914492 4917036 - CmoCh15G009540.1 Cmo15g00954 398462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00954 254 MobiDBLite consensus disorder prediction 105 124 - -
Cmo15g00954 254 CDD bHLH_AtBPE_like 125 209 - -
Cmo15g00954 254 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 185 IPR011598 GO:0046983
Cmo15g00954 254 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 204 IPR036638 GO:0046983
Cmo15g00954 254 MobiDBLite consensus disorder prediction 97 124 - -
Cmo15g00954 254 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 97 230 IPR024097 GO:0006355
Cmo15g00954 254 PANTHER TRANSCRIPTION FACTOR BHLH75 97 230 - -
Cmo15g00954 254 Gene3D - 132 203 IPR036638 GO:0046983
Cmo15g00954 254 Pfam Helix-loop-helix DNA-binding domain 139 186 IPR011598 GO:0046983
Cmo15g00954 254 SMART finulus 141 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00282 Cmo-Chr11:1371030 Cmo15g00954 Cmo-Chr15:4914492 3.49E-48 dispersed
Cmo14g00830 Cmo-Chr14:4294708 Cmo15g00954 Cmo-Chr15:4914492 4.72E-42 dispersed
Cmo15g00954 Cmo-Chr15:4914492 Cmo18g00036 Cmo-Chr18:213740 3.42E-50 dispersed
Cmo15g00954 Cmo-Chr15:4914492 Cmo13g01064 Cmo-Chr13:8842441 4.26E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11189 PF00010 HLH 8.20E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00954 - - cpep:111809259 460.299