Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00955 ATGACGGTGAAAAACGAGAATCTCGACAAGGACAAGTTGCTGGAGCAGTTTCTGAGAATCGGATTGGATGAGCGTACTGCACGAAACACCGTTGCCAACAATAAGGTCACTGCCAATCTCAATGCCGTTATTCATGAGGCTGGCGTGCTTGAAGGATGCGATAAGGCTGTTGGAAATCTATTATATACCGTTGCGACAAAGTATCCTACAAATGCACTTGTTCATCGACCAATATTGCTGAAATATGTTACCTCAAATAAGATAAAGATGCCGGCTCAATTGGAAGCGGCATTTTCATTTTTTTCTGCTGCAGGCCAAGAAGATATTAAATTAAATGAATTTGAAGATAAATGTGGTGTTGGTGTAGAAGTTTCAGCTGAAGAAATTGAGAAGACTGTGTATGAGGTTTTTGAAGAACATAAAAATGAAATTCTGGAGCAACGTTATCGAACGAATGTGGGTGACTTGTTTGGGCAGGTACGGAAGAAGCATCCTTGGGCTGATCCAAAGATTGTAAAGGATAAACCTGTTGCTATTGTTTCAGTGGAACAGCCTCCATCTGAGGAAGATCTTAACCCATATTTAATATTCCCCCGGCCAGAGGATAATTATAAGGTTCATACTGAAGTATTTTTCAGTAATGGAACTATCCTAAGATGTTGCAACACCAAGGAGCTGCTTGAAAAGCACCTAAAAGCAACAGGGGGAAGAGTTTTGACTCGCTTTCCTCCTGAACCAAATGGTTATCTTCATATTGGTCATGCCAAGGCAATGTTTGTTGATTTTGGCCTGGCAAAAGAGCGAGGTGGAGGTTGTTATTTGAGGTATGACGACACGAATCCAGAAGCTGAGAAGAAGGAATATATTGATCATATAGAAGAGATTGTCAAGTGGATGGGTTGGGAGCCTTTCAAGATTACTTATACTAGTGATTACTTCCAAGATCTGTATGAGTTAGCTGTGGAGCTGATACGTAGGGGTCATGCTTATGTGGATCACCAGACTCCTGACGAAATAAAGGAGTACAGAGAGAAAAAGATGAATAGTCCCTGGAGGGATAGGCCTGTGGCTGAGTCATTGAAATTGTTTGACGAAATGAAGCAAGGTCTGATTGAGGAAGGCAAGGCGACTCTTAGAATGAAACAAGACATGCAGAGTGATAATTTTAATATGTATGATCTTATTGCATATCGTATTAAGTTTACTCCTCATCCACATGCTGGAGACAAGTGGTGTATTTATCCAAGCTACGATTATGCACACTGCACTGTGGATTCTCTTGAGAATATAACACATTCGCTGTGTACCTTGGAATTTGAAACACGTCGTGCTTCGTACTACTGGTTATTGCATGCACTGGACCTTTATCAACCGTATGTGTGGGAATATTCTCGCCTCAATGTTTCAAATAATGTGTTGTCTAAGCGTAAGTTAAATCGACTGGTGACCGAAAAATGGGTTGATGGTTGGGATGATCCTCGCCTATTGACACTTGCTGGTCTTAGGCGCAGAGGTGTTACATCAACTGCAATTAATGCGTTTGTTCGAGGAATGGGAATTACAAGAAGTGACTGTTCTTTGATTCAGTTTAATCGTCTTGAATATCACATTAGAGAAGAGCTAAATAAAACTGCTGCACGAGCAATGGTTGTCTTGCAGCCACTTAAGGTTGTTATTACAAACTTAGAAAATGGATCAATTTTGGATCTTGATGCCAAGAAATGGCCTGAAGCTCAAGCAGATGAGGCATCGGCCTTTTATAAGGTTCCCTTTTCCAATATTGTGTACATAGAACAATCAGATTTCCGGTTGAAAGATTCAAAAGATTACTATGGTCTTGCACCTGGAAAGTCTGTCCTTCTGAGGTATGCATATCCTATTAAATGTGCGGATGTTATCCTTGCGGATGATAAGGAAACTGTACTTGAGATTCGAGCAGAATATGATGCTTCCAAGAAATCAAAGCCAAAGGGGGTCCTACATTGGGTTGCACAACCTTCTCCAGGAGTTAATCCACTCAATGTAGAAGTTAGATTGTTTGACAAGCTATTCCTTTCTGAGAACCCTGCTGAACTTGATGATTGGCTTGCTGATTTGAACCCACATTCTAAAGTAGTCATCCCAAGTGCATATGCTGTACCAGAACTTAGGAATGCTGTTGTTGGGGACACATTCCAATTTGAAAGGCTTGGGTATTTTGCGGTTGATAAAGACTCAACTCCTGAGAAACTCGTATTCAATCGGACAGTCACGCTGAGAGATAGCTATAAGAGCAGCAAGTGA 2283 41.04 MTVKNENLDKDKLLEQFLRIGLDERTARNTVANNKVTANLNAVIHEAGVLEGCDKAVGNLLYTVATKYPTNALVHRPILLKYVTSNKIKMPAQLEAAFSFFSAAGQEDIKLNEFEDKCGVGVEVSAEEIEKTVYEVFEEHKNEILEQRYRTNVGDLFGQVRKKHPWADPKIVKDKPVAIVSVEQPPSEEDLNPYLIFPRPEDNYKVHTEVFFSNGTILRCCNTKELLEKHLKATGGRVLTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGGCYLRYDDTNPEAEKKEYIDHIEEIVKWMGWEPFKITYTSDYFQDLYELAVELIRRGHAYVDHQTPDEIKEYREKKMNSPWRDRPVAESLKLFDEMKQGLIEEGKATLRMKQDMQSDNFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCTVDSLENITHSLCTLEFETRRASYYWLLHALDLYQPYVWEYSRLNVSNNVLSKRKLNRLVTEKWVDGWDDPRLLTLAGLRRRGVTSTAINAFVRGMGITRSDCSLIQFNRLEYHIREELNKTAARAMVVLQPLKVVITNLENGSILDLDAKKWPEAQADEASAFYKVPFSNIVYIEQSDFRLKDSKDYYGLAPGKSVLLRYAYPIKCADVILADDKETVLEIRAEYDASKKSKPKGVLHWVAQPSPGVNPLNVEVRLFDKLFLSENPAELDDWLADLNPHSKVVIPSAYAVPELRNAVVGDTFQFERLGYFAVDKDSTPEKLVFNRTVTLRDSYKSSK 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4919312 4932400 - CmoCh15G009550.1 Cmo15g00955 398463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00955 760 Gene3D - 123 180 IPR042559 -
Cmo15g00955 760 Gene3D - 8 122 IPR042558 -
Cmo15g00955 760 PANTHER OS05G0182800 PROTEIN 12 174 - -
Cmo15g00955 760 PANTHER OS05G0182800 PROTEIN 180 757 - -
Cmo15g00955 760 SUPERFAMILY Ribosomal protein L25-like 545 755 IPR011035 GO:0006412
Cmo15g00955 760 Gene3D Ribosomal Protein L25; Chain P 669 754 IPR020056 -
Cmo15g00955 760 TIGRFAM glnS: glutamine--tRNA ligase 238 756 IPR004514 GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425
Cmo15g00955 760 PRINTS Glutamyl-tRNA synthetase signature 415 425 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmo15g00955 760 PRINTS Glutamyl-tRNA synthetase signature 270 283 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmo15g00955 760 PRINTS Glutamyl-tRNA synthetase signature 241 253 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cmo15g00955 760 PANTHER GLUTAMINE-TRNA LIGASE 12 174 - -
Cmo15g00955 760 PANTHER GLUTAMINE-TRNA LIGASE 180 757 - -
Cmo15g00955 760 CDD GlnRS_core 237 547 - -
Cmo15g00955 760 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 244 255 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmo15g00955 760 SUPERFAMILY Nucleotidylyl transferase 238 551 - -
Cmo15g00955 760 Gene3D Ribosomal Protein L25; Chain P 549 668 IPR020056 -
Cmo15g00955 760 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 545 736 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Cmo15g00955 760 Gene3D HUPs 210 548 IPR014729 -
Cmo15g00955 760 Pfam tRNA synthetases class I (E and Q), catalytic domain 238 542 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cmo15g00955 760 Pfam Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 12 169 IPR007639 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00955 K01886 QARS, glnS; glutaminyl-tRNA synthetase [EC:6.1.1.18] - csv:101210547 1477.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01213 Cmo-Chr11:7197941 Cmo15g00955 Cmo-Chr15:4919312 7.18E-69 dispersed
Cmo19g00835 Cmo-Chr19:8169906 Cmo15g00955 Cmo-Chr15:4919312 7.60E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0820 Cone19ag0826 . . . . . . . . . . . . . . . . Cmo15g00955 . Cma15g00916 . Car15g00859 Cpe13g00403 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002630 2 4 2 3 2 2 1 2 2 2 2 2 1 2 2 1 2 2 1 2 2 1 1 2 2 2 3 2 2 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00955 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 1.014626 0.0 0.0 0.0