Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00959 ATGAGAATGCGGTCCGAGAGATCGAAATCTCTTCATAATTTCATGTTGCCGTGTTTGAAGTGGGGGAATCAGAAGCACTTGAGGTGCATGAAGGTGAATTCTAATGGTGTACAGGTCTCCGGCGTGAATCGACAATCTCACTCCTCGAGATCGGAGGAGTCTACGGAGAGTAGGAGTCGGGAATCGGGCTCAGAGATGCGGATGTTCTTCAAGGATTTGGAGATGAGACCGAAGGTTTCGAAATCGATAATCAAGAAAACCGACGACGTCGGGATCGAGGCGGTCAGAGAGAAGCTTATGTTTGATCTGAAGACGGCGGCCGATAAAATGAAAGAGGCGATTTTAAGTAAGGAGGCAGTGGTGGCCGAAGAAGAGGCGGAAGAGAAGAACGATTCTGCCGGAATGGAAGAGACGCCGGCGGCGGTTGCGTTATCGATGGTGGAGACCAGACCTTGGAATCTAAGGACGAGGAGAGCCGCTTGTAAGGCTCCGAATGTTGACGGTGGTGGAAGTAAGAACTTGAAGCTTGATGAGAAGAAATCGAATTCCAATTCCCCGTTGCGTAGTGACGGTGGCGCCAAGTCACCTAGGTTGAAAATTGGGACGGAGAAGACGAAGAAGAAGGTGAAATTGGTAGTGCCGCTCTCGAAGAGAGAGATCGATGAAGATTTCATGGAAATGGTGGGACTCAGACCACCGAGGCGGCCCAAGAAGAGGACCAGAATCGTACAAAAGCAATTAGATACGCTTTTTCCTGGGTTATGGCTGTCGGAGATCACAGCTGATTTGTATAAGGTCCCTGAATTACCTGAAAACGGCAAGAAATAA 828 49.15 MRMRSERSKSLHNFMLPCLKWGNQKHLRCMKVNSNGVQVSGVNRQSHSSRSEESTESRSRESGSEMRMFFKDLEMRPKVSKSIIKKTDDVGIEAVREKLMFDLKTAADKMKEAILSKEAVVAEEEAEEKNDSAGMEETPAAVALSMVETRPWNLRTRRAACKAPNVDGGGSKNLKLDEKKSNSNSPLRSDGGAKSPRLKIGTEKTKKKVKLVVPLSKREIDEDFMEMVGLRPPRRPKKRTRIVQKQLDTLFPGLWLSEITADLYKVPELPENGKK 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 4979790 4982739 + CmoCh15G009590.1 Cmo15g00959 398467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00959 275 Pfam Protein of unknown function (DUF1639) 215 264 IPR012438 -
Cmo15g00959 275 PANTHER OS01G0688600 PROTEIN 2 268 - -
Cmo15g00959 275 MobiDBLite consensus disorder prediction 38 65 - -
Cmo15g00959 275 PANTHER PUTATIVE (DUF1639)-RELATED 2 268 - -
Cmo15g00959 275 MobiDBLite consensus disorder prediction 49 65 - -
Cmo15g00959 275 MobiDBLite consensus disorder prediction 156 201 - -
Cmo15g00959 275 Coils Coil 107 127 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00959 - - - csv:101205564 405.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00325 Cmo-Chr10:1464973 Cmo15g00959 Cmo-Chr15:4979790 8.81E-38 dispersed
Cmo11g00286 Cmo-Chr11:1388736 Cmo15g00959 Cmo-Chr15:4979790 5.47E-07 dispersed
Cmo15g00959 Cmo-Chr15:4979790 Cmo15g01163 Cmo-Chr15:8103985 3.60E-26 dispersed
Cmo15g00959 Cmo-Chr15:4979790 Cmo18g01019 Cmo-Chr18:11019043 3.17E-50 wgd
Cmo15g00959 Cmo-Chr15:4979790 Cmo04g02164 Cmo-Chr4:15568573 5.03E-156 wgd
Cmo15g00959 Cmo-Chr15:4979790 Cmo04g01571 Cmo-Chr4:8038039 2.67E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g330 . . Bda01g02068 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0819 Cone19ag0825 . Cone9ag0452 . . . . . . . . . Bpe02g02259 . . . . Cmo15g00959 . Cma15g00920 . Car15g00862 Cpe13g00400 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004927 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00959 Cmo_Chr15 FPKM 27.889273 27.047276 27.412445 27.494644 53.510765 57.60281 49.184933 38.977287 36.751671 32.747219