Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00961 ATGAAGACGGGTTCGAAGTCGGAAGGACCTTCGGCTCCAGCGCTTCGACGGGACCCGTACGAGGTTTTAAGCGTATCCAGGGATTCCACTGATCAGGAAATCAAGTCTGCTTATAGGAAGCTTGCTCTCAAATATCACCCAGATAAGAATGGCAGTAACCCTGAAGCTTCAGAACTTTTTAAGGAGGTTGCATATTCTTATAGCATCCTATCTGATCCAGAGAAGAGAAGGCAATATGACAGTGCTGGCTTTGAGGCCCTTGATGCTAGTGGCATGGATATGGAAATAGACTTATCCAATCTTGGAACTGTCAATACCATGTTTGCAGCTTTGTTCAGCAAGCTGGGTGTTCCTATTAAGACTACAATTTCTGCTAATGTTCTTGAAGAAGCTCTGAATGGAACTGTCACAGTTAGGCCTCTTCCTATTGGAACATCAGTTAGTGGCAAGGTGGATAAGCAATGTGCTCACTTTTTTGGTGTGACAATTAACGAGGAGCAAGCTCAAGCTGGAATTGTTATAAGGGTTACTTCAACTGCACAAAGTAAATTCAAGTTGCTCTTTTTTGAACACGATGTCAGCGGCGGTTACAATTTGGCCTTACAGGTTAAGCTGTGGGAAGATAGTGAGAAGTCTGGGAAAGTAACATCTGCTGGGTTTTACTTTTTGCATTTTCAAGTGTACAGGATGGATTCCACTGTCAATGCGTTGGCAATGGCTAAGGACCCTGAAGCTTCTTTCTTCAAGAGGTTGGAAGGTCTTCAGCCTTGTGAGGTCTCAGAGCTAAAGGCTGGCACCCATATTTTTGCTGTTTATGGTCTTAACTTAGATTTCTTAATTCATCTTTCAAATTTTGTTCTGTTTGGTGTTAACTGCTTTTTTGACATCTTTCTTGTTTATTCAGGAGATAACTTTTTTAAGACTGCTGCATATACTATTGAGGCACTATGTACAAAAAATTATGAAGAGACAACAGAAAAGCTGAAAGATATTGAGGCTCAAATTTTGAGAAAGAGAAATGAGCTACGCCAATTTGAGACAGAATACCGGAAGGTGTTGAAATCTTCTTCTTCTCCTTCCCTCCCTCTGGCATTAGCGCGTTTCCAAGAAGTGACCAACAGATACAATGAGGAAAAGCAGTTTGTGGACGAGCTTCTTAAACAACGGGATGGCATACACGCTTCATTCACTGTCACAAAATCATCGAATCACATAGGAGCTGGTGCTACGAGTAATGGAACTAGTAGTAAATCTACTGGCGACGATTCAAAGGTCGATAATCAAGGAGAAGATGGAACCTCCGATGAAAAAGATAAATCTTTTAAAAAGAGATGGTTTGGTATGCCTCGGGGATCTGACAAAAAGCTCGGATGA 1374 41.7 MKTGSKSEGPSAPALRRDPYEVLSVSRDSTDQEIKSAYRKLALKYHPDKNGSNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDASGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVDKQCAHFFGVTINEEQAQAGIVIRVTSTAQSKFKLLFFEHDVSGGYNLALQVKLWEDSEKSGKVTSAGFYFLHFQVYRMDSTVNALAMAKDPEASFFKRLEGLQPCEVSELKAGTHIFAVYGLNLDFLIHLSNFVLFGVNCFFDIFLVYSGDNFFKTAAYTIEALCTKNYEETTEKLKDIEAQILRKRNELRQFETEYRKVLKSSSSPSLPLALARFQEVTNRYNEEKQFVDELLKQRDGIHASFTVTKSSNHIGAGATSNGTSSKSTGDDSKVDNQGEDGTSDEKDKSFKKRWFGMPRGSDKKLG 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5006819 5015280 - CmoCh15G009610.1 Cmo15g00961 398469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00961 457 ProSiteProfiles dnaJ domain profile. 18 83 IPR001623 -
Cmo15g00961 457 CDD DnaJ 18 72 IPR001623 -
Cmo15g00961 457 MobiDBLite consensus disorder prediction 423 457 - -
Cmo15g00961 457 SMART dnaj_3 17 75 IPR001623 -
Cmo15g00961 457 PRINTS DnaJ domain signature 38 53 IPR001623 -
Cmo15g00961 457 PRINTS DnaJ domain signature 20 38 IPR001623 -
Cmo15g00961 457 PRINTS DnaJ domain signature 55 75 IPR001623 -
Cmo15g00961 457 PRINTS DnaJ domain signature 75 94 IPR001623 -
Cmo15g00961 457 MobiDBLite consensus disorder prediction 403 422 - -
Cmo15g00961 457 ProSitePatterns Nt-dnaJ domain signature. 60 79 IPR018253 -
Cmo15g00961 457 Coils Coil 321 348 - -
Cmo15g00961 457 MobiDBLite consensus disorder prediction 403 457 - -
Cmo15g00961 457 MobiDBLite consensus disorder prediction 1 28 - -
Cmo15g00961 457 Pfam DnaJ domain 18 80 IPR001623 -
Cmo15g00961 457 Gene3D DnaJ domain 5 98 IPR036869 -
Cmo15g00961 457 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 276 - -
Cmo15g00961 457 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 295 455 - -
Cmo15g00961 457 SUPERFAMILY Chaperone J-domain 17 94 IPR036869 -
Cmo15g00961 457 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 3 276 - -
Cmo15g00961 457 PANTHER CHAPERONE PROTEIN DNAJ 15-LIKE 295 455 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01569 Cmo15g00961 CCT
Cmo15g00961 Cmo18g01016 CCT
Cmo04g02170 Cmo15g00961 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02170 Cmo-Chr4:15800030 Cmo15g00961 Cmo-Chr15:5006819 0 dispersed
Cmo05g00908 Cmo-Chr5:6961583 Cmo15g00961 Cmo-Chr15:5006819 5.41E-166 dispersed
Cmo12g00670 Cmo-Chr12:4459308 Cmo15g00961 Cmo-Chr15:5006819 5.16E-162 dispersed
Cmo15g00961 Cmo-Chr15:5006819 Cmo08g00447 Cmo-Chr8:2765796 3.73E-17 dispersed
Cmo15g00961 Cmo-Chr15:5006819 Cmo18g01016 Cmo-Chr18:10990716 3.33E-13 wgd
Cmo15g00961 Cmo-Chr15:5006819 Cmo04g02166 Cmo-Chr4:15757886 2.24E-23 wgd
Cmo15g00961 Cmo-Chr15:5006819 Cmo04g01569 Cmo-Chr4:8025863 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00961 - - csv:101216672 748.429