Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00962 ATGAAGAGCCAAATTCAAAGCCCGAAGCTGATCCATATCCATCTTAGCTTCTTCAACGTCGTCCCTTACATCCTCCTCTTCACCGCCGGAATCACGGCCGGAGTTTTCCTCACTTTCTATCTCTCAAATTTCTCCATCAACTTAAACCTCACTCAGATCCCTCCTTCGATTTCTTCCCCGGTGACCGGACCCCGGGTGGGGTTGGAGGAGTATTTGAAACCGCCGGAAGTAATGCACGACATGGAGGATCAGGAGCTTTTGTGGAGGGCTTCAATGGCGGCCGGAATTCGGGAATTCCCGTTCCGGCGGGTTCCGAAGGTGGCGTTCATGTTCTTGACAAGAGGGCCGATGTATTTGGCGCCTCTTTGGGAAGAGTTCTTCAAGGGAAATGAAGGGCTTTACTCGGTTTACATTCACTCCGATCCTTCTTATAATCATTCTTTCCCCGAAAGCCCTGTTTTTCATGGTCGCAGAATTCCGAGCAAGCAAGTGGGATGGGGAAAAGTGAACATGATCGAGGCAGAGCGACGCCTAATTTCAAACGCCCTCCTCGATATTTCAAACGAGCGATTCGTTCTTCTCTCGGAAGCCTGCATTCCTCTTTTCAACTTCTCCACTGTCTACTCTTTCCTCATGAACTCCACCATGAAAAGCTTCATTATGAGCTATGATGAGCCAAGCAACGTCGGTCGTGGCCGATATAGGGCTAAGATGTTCCCACCCATCTCCCTAAAACAATGGCGGAAAGGCTCGCAGTGGTTCGAGATGGACAGAGACACCGCCGTTGCCGTCGTCTCTGACCGGAAATACTTCCCTGTCTTCGTAAAGTATTGCAAAGGCCAATGCTACTCCGATGAACACTACATGCCCACCTTGGTCAATGTTTTGGGCTGGGACAGGAATGCTAATAGGAGTTTGACTTGGGTTGACTGGTCAAAGGGTGGCCCACATCCAACGAGATTCTCGCGGTCAGATATCCACGTGGAGCTTTTACAGAGGCTAAGGAATCAAACTGAGTGTACGAAAAGTAAAACGGAGGGGACAGGTGTTTGCTTCCTATTCGCTAGAAAGTTTTCTCCGAACACATTGGGAAGGCTAATGAAAATTGCACCAAAGGCCTTGCACTTTGGGAGATAG 1137 49.34 MKSQIQSPKLIHIHLSFFNVVPYILLFTAGITAGVFLTFYLSNFSINLNLTQIPPSISSPVTGPRVGLEEYLKPPEVMHDMEDQELLWRASMAAGIREFPFRRVPKVAFMFLTRGPMYLAPLWEEFFKGNEGLYSVYIHSDPSYNHSFPESPVFHGRRIPSKQVGWGKVNMIEAERRLISNALLDISNERFVLLSEACIPLFNFSTVYSFLMNSTMKSFIMSYDEPSNVGRGRYRAKMFPPISLKQWRKGSQWFEMDRDTAVAVVSDRKYFPVFVKYCKGQCYSDEHYMPTLVNVLGWDRNANRSLTWVDWSKGGPHPTRFSRSDIHVELLQRLRNQTECTKSKTEGTGVCFLFARKFSPNTLGRLMKIAPKALHFGR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5018979 5020239 + CmoCh15G009620.1 Cmo15g00962 398470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00962 378 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 9 375 IPR044174 GO:0016757
Cmo15g00962 378 Pfam Core-2/I-Branching enzyme 107 334 IPR003406 GO:0016020|GO:0016757
Cmo15g00962 378 PANTHER CORE-2/I-BRANCHING ENZYME 9 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00962 - - - csv:101202787 687.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00327 Cmo-Chr10:1480381 Cmo15g00962 Cmo-Chr15:5018979 5.11E-138 dispersed
Cmo14g00806 Cmo-Chr14:4158525 Cmo15g00962 Cmo-Chr15:5018979 7.22E-125 dispersed
Cmo14g01312 Cmo-Chr14:10973653 Cmo15g00962 Cmo-Chr15:5018979 1.24E-106 dispersed
Cmo15g00962 Cmo-Chr15:5018979 Cmo13g01057 Cmo-Chr13:8810733 1.22E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g340 Blo01g00733 . Bda01g01847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0449 . Csa05g02066 . . . . . . . Bpe02g02024 . . . . Cmo15g00962 . Cma15g00923 . Car15g00865 Cpe13g00397 . Bhi12g00834 . . . . . Lcy10g1475 Cla01g00570 Cam01g0596 Cec01g0585 Cco01g0611 Clacu01g0589 Cmu01g0561 Cre09g1946 Lsi09g00618 . Chy09g00894 Cme09g01427
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002751 1 2 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 1 2 2 2 2 2 2 2 2 2 2 3 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00962 Cmo_Chr15 FPKM 5.081604 5.404005 12.788553 14.156826 32.100327 27.238285 31.718279 15.723837 14.789201 17.027077