Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00963 ATGGAACGACACGGTGTGGGGCGTGAGGAAAAGCATGACCAGGACGACATGTCGCCAAGGACTCGCTTGACGCTTACTAGACATGAATTGGCAATTGGTTGGCGCTGGTCTGTTGTAACCTTCAGGTATAAGCGAAATGACGACGCTTGCGTGGGGAAAAGATCGTTGCCCGCTTTGGTCAATGCAAACAGGAAGGAATACGAAGGGGAAGTGGTGGAGAGCAAGATGAGTGGCGGTGGCAGTAGCACTTCTCGAAGCACTAGGGATTTGATCTGCCATGCCGGTGCTGGTGCTGCTGCAGGTGCTATAGCAGCCACGTTCGTCTGCCCTTTAGATGTGATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAAAGAGGAGGTAGTATTATTGTCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGACTGTACCGTGGCCTTTCACCAACAATATTAGCACTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCATACTTCATTCAGATGGGGACGATGGTCATCAACTCTCGTTCGGCGCAAATATGGTTGCTGCTGCTGGGGCTGGGGGATCTACTGCCACTGCAACAAATCCTTTATGGGTTGTTAAGACCAGACTTCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATCATACAGGAAGAAGGAATTCGCGGGCTTTACAGTGGTATCCTCCCTTCATTGGTTGGGATAAGTCATGTTGCCATTCAATTTCCAGCATACGAAAAGCTCAAATCATATATGGCAAAAAGAGATAACACAACCATTGAAAAGCTAACTCCGGGACATTTAGCTATTGCCTCGTCATTGTCGAAAGTTATGGCCTCGGTAACGACTTACCCACATGAGGTAGTTCGTTCCAGGATGCAAGAGCAAGGCCAAGCCAGAAATGTTGCTCCTCAATACTCCGGCGTACTGGACTGTATCAAAAAGGTTTTTCAAAAGGAAGGTCTTCCCGGTTTTTACAGGGGTTGTGCGACAAATCTGTTACGAACAACTCCATCCGCCGTAATAACTTTCACCAGCTATGAGATGATACATAGGTTTCTACTGCAATTTATACCTCAAGGCGAGGAGAAACCTTCCCCCCATCTGAATTCGAATAGCAATAGCCATGTGAAGCCCCAAAAGGCGAACCGAGACGACTCGAAGGAAGAGAGTGATTCCGGCTTACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAACAAAGAACAGTTAGCATCTAGACACTGA 1338 47.53 MERHGVGREEKHDQDDMSPRTRLTLTRHELAIGWRWSVVTFRYKRNDDACVGKRSLPALVNANRKEYEGEVVESKMSGGGSSTSRSTRDLICHAGAGAAAGAIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIVTSLQDIMRSEGFRGLYRGLSPTILALLPNWAVYFTVYEHLKGILHSDGDDGHQLSFGANMVAAAGAGGSTATATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIIQEEGIRGLYSGILPSLVGISHVAIQFPAYEKLKSYMAKRDNTTIEKLTPGHLAIASSLSKVMASVTTYPHEVVRSRMQEQGQARNVAPQYSGVLDCIKKVFQKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLQFIPQGEEKPSPHLNSNSNSHVKPQKANRDDSKEESDSGLQQSQSQPSKQTRIPLGNKEQLASRH 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5025679 5033570 + CmoCh15G009630.1 Cmo15g00963 398471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00963 445 ProSiteProfiles Solute carrier (Solcar) repeat profile. 288 378 IPR018108 -
Cmo15g00963 445 MobiDBLite consensus disorder prediction 389 445 - -
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 93 106 IPR002067 GO:0055085
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 106 120 IPR002067 GO:0055085
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 297 319 IPR002067 GO:0055085
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 250 268 IPR002067 GO:0055085
Cmo15g00963 445 PRINTS Mitochondrial carrier protein signature 152 172 IPR002067 GO:0055085
Cmo15g00963 445 MobiDBLite consensus disorder prediction 1 20 - -
Cmo15g00963 445 Gene3D Mitochondrial carrier domain 65 183 IPR023395 -
Cmo15g00963 445 Gene3D Mitochondrial carrier domain 184 383 IPR023395 -
Cmo15g00963 445 ProSiteProfiles Solute carrier (Solcar) repeat profile. 88 177 IPR018108 -
Cmo15g00963 445 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 83 388 - -
Cmo15g00963 445 SUPERFAMILY Mitochondrial carrier 88 374 IPR023395 -
Cmo15g00963 445 ProSiteProfiles Solute carrier (Solcar) repeat profile. 188 276 IPR018108 -
Cmo15g00963 445 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 83 388 IPR044712 GO:0006862|GO:0055085
Cmo15g00963 445 MobiDBLite consensus disorder prediction 418 437 - -
Cmo15g00963 445 Pfam Mitochondrial carrier protein 290 380 IPR018108 -
Cmo15g00963 445 Pfam Mitochondrial carrier protein 93 179 IPR018108 -
Cmo15g00963 445 Pfam Mitochondrial carrier protein 187 280 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00963 Cmo-Chr15:5025679 Cmo17g01033 Cmo-Chr17:8792819 5.28E-92 dispersed
Cmo15g00963 Cmo-Chr15:5025679 Cmo08g00433 Cmo-Chr8:2683606 7.04E-135 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00963 K15115 - csv:101216902 617.461