Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00971 ATGCACAAGAGCACTACTTCTGCGTCTAATACTATTGCTGCTGGGACCACTATGTCATCGTCGTCGCAACTGAAATCGCAGCTTCAAACAAACAACGTTTATGCTTCCCTCTATAATTCCTCAATCTTTGCTCCAAAGCAATCCGTGCCTGTCTCTCTTCCATCGACTCTCTATGGTGACTCTACTCACACGGATTCAATCTCCGCTTCAAAATCGATAAACAACCACCTCTATCAAACCTGCGTCGTTCAAGATCACCAAGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTTAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGTCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCAAACTCCTCCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCAGAGAAAGGGGCAAGCAGTTCGACATGGGAAGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCAGCAGCCAGGGCGGAAAGGTCCGCGTCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTTCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAGCTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGTAACAAATGGCAGGAAACAGGTAGCTGCCCTTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGTCCCGTCATCCGCCACCCCCGGTACAAGACGGAGGTCTGCCGTATGGTCCTTGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGCCGCTCAAGCCCACCTGCAGGACCGCCCCCAAGCTCGACAGGTGA 1047 52.24 MHKSTTSASNTIAAGTTMSSSSQLKSQLQTNNVYASLYNSSIFAPKQSVPVSLPSTLYGDSTHTDSISASKSINNHLYQTCVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQTPPFNFVEGFRGLSVAEKGASSSTWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGSSQGGKVRVSSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTAPKLDR 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5095772 5098621 + CmoCh15G009710.1 Cmo15g00971 398479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00971 348 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 337 IPR045877 GO:0003729
Cmo15g00971 348 SUPERFAMILY CCCH zinc finger 258 293 IPR036855 GO:0046872
Cmo15g00971 348 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 52 337 - -
Cmo15g00971 348 SMART c3hfinal6 261 288 IPR000571 GO:0046872
Cmo15g00971 348 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Cmo15g00971 348 Coils Coil 100 120 - -
Cmo15g00971 348 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Cmo15g00971 348 ProSiteProfiles Zinc finger C3H1-type profile. 261 289 IPR000571 GO:0046872
Cmo15g00971 348 SUPERFAMILY CCCH zinc finger 295 329 IPR036855 GO:0046872
Cmo15g00971 348 MobiDBLite consensus disorder prediction 1 23 - -
Cmo15g00971 348 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 262 287 IPR000571 GO:0046872
Cmo15g00971 348 Gene3D - 255 294 - -
Cmo15g00971 348 Gene3D - 295 331 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02124 Cmo-Chr4:13959321 Cmo15g00971 Cmo-Chr15:5095772 8.99E-09 dispersed
Cmo04g03107 Cmo-Chr4:21600593 Cmo15g00971 Cmo-Chr15:5095772 8.02E-57 dispersed
Cmo15g00971 Cmo-Chr15:5095772 Cmo02g01666 Cmo-Chr2:9571806 6.86E-07 dispersed
Cmo15g00971 Cmo-Chr15:5095772 Cmo12g01251 Cmo-Chr12:11088182 2.65E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11191 PF00642 zf-CCCH 5.40E-12 CL0537 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00971 K18753 - csv:101203274 635.18