Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g00971 | ATGCACAAGAGCACTACTTCTGCGTCTAATACTATTGCTGCTGGGACCACTATGTCATCGTCGTCGCAACTGAAATCGCAGCTTCAAACAAACAACGTTTATGCTTCCCTCTATAATTCCTCAATCTTTGCTCCAAAGCAATCCGTGCCTGTCTCTCTTCCATCGACTCTCTATGGTGACTCTACTCACACGGATTCAATCTCCGCTTCAAAATCGATAAACAACCACCTCTATCAAACCTGCGTCGTTCAAGATCACCAAGAAATGGTTAATCGTCATAGCCTCTGTCTCACTCATCTTCGGGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATTCACCTTAGAAGTATTAACCACGAGCTTAGCAAACACCTGAGTCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCAAACTCCTCCGTTTAATTTTGTGGAGGGATTCCGCGGACTCAGTGTCGCAGAGAAAGGGGCAAGCAGTTCGACATGGGAAGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGCGTTGAGGTGGAGAGGTTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAGATGGCTCAAGGCGGCAGCAGCCAGGGCGGAAAGGTCCGCGTCTCATCTCGGCCCAGAACTGCAAGTCCTGTCAAGGTTACGCAGAAGGTGTACGTTCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAGCTGGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGTAACAAATGGCAGGAAACAGGTAGCTGCCCTTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGTCCCGTCATCCGCCACCCCCGGTACAAGACGGAGGTCTGCCGTATGGTCCTTGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTCCGCCATGCTCTCACTGACCAGGAAAGGCTCATGGGGCCGCTCAAGCCCACCTGCAGGACCGCCCCCAAGCTCGACAGGTGA | 1047 | 52.24 | MHKSTTSASNTIAAGTTMSSSSQLKSQLQTNNVYASLYNSSIFAPKQSVPVSLPSTLYGDSTHTDSISASKSINNHLYQTCVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQTPPFNFVEGFRGLSVAEKGASSSTWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQGGSSQGGKVRVSSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGPLKPTCRTAPKLDR | 348 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 5095772 | 5098621 | + | CmoCh15G009710.1 | Cmo15g00971 | 398479 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g00971 | 348 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 52 | 337 | IPR045877 | GO:0003729 | |
Cmo15g00971 | 348 | SUPERFAMILY | CCCH zinc finger | 258 | 293 | IPR036855 | GO:0046872 | |
Cmo15g00971 | 348 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 | 52 | 337 | - | - | |
Cmo15g00971 | 348 | SMART | c3hfinal6 | 261 | 288 | IPR000571 | GO:0046872 | |
Cmo15g00971 | 348 | SMART | c3hfinal6 | 299 | 326 | IPR000571 | GO:0046872 | |
Cmo15g00971 | 348 | Coils | Coil | 100 | 120 | - | - | |
Cmo15g00971 | 348 | ProSiteProfiles | Zinc finger C3H1-type profile. | 299 | 327 | IPR000571 | GO:0046872 | |
Cmo15g00971 | 348 | ProSiteProfiles | Zinc finger C3H1-type profile. | 261 | 289 | IPR000571 | GO:0046872 | |
Cmo15g00971 | 348 | SUPERFAMILY | CCCH zinc finger | 295 | 329 | IPR036855 | GO:0046872 | |
Cmo15g00971 | 348 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo15g00971 | 348 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 262 | 287 | IPR000571 | GO:0046872 | |
Cmo15g00971 | 348 | Gene3D | - | 255 | 294 | - | - | |
Cmo15g00971 | 348 | Gene3D | - | 295 | 331 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g02124 | Cmo-Chr4:13959321 | Cmo15g00971 | Cmo-Chr15:5095772 | 8.99E-09 | dispersed | |
Cmo04g03107 | Cmo-Chr4:21600593 | Cmo15g00971 | Cmo-Chr15:5095772 | 8.02E-57 | dispersed | |
Cmo15g00971 | Cmo-Chr15:5095772 | Cmo02g01666 | Cmo-Chr2:9571806 | 6.86E-07 | dispersed | |
Cmo15g00971 | Cmo-Chr15:5095772 | Cmo12g01251 | Cmo-Chr12:11088182 | 2.65E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11191 | PF00642 | zf-CCCH | 5.40E-12 | CL0537 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g00971 | K18753 | - | csv:101203274 | 635.18 |