Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00983 ATGGAGCGGCATAAACCCGGGTCGGATTCTTATTACACCATTCTAGGAGTCGGGTCGGATTGTTCCGCAGAAGAGATTCGGCGGGCTTACCGGCGGCTGGCCATGCGATGGCATCCGGATCGATGGGCGAGAAGAAGAGCAGCCCCTGCTTTGCTGAGCAAAGCGAAAGCCAAATTCCAGCAGATTCAACAAGCTTATTCGGTTTTGTCGGACCAGAGGAAAAGAGCATTATACGATGCTGGCTTCTACAATGATGAAGACGATGATGATGATGAACACAATGAGGCATTTTATGAGTTCATGCAAGAAATGGTGTCTCTAATGGCCAAAGCAAGGAGTGAGGATTGCAAGTGTGCCACTATGGAGGAGCTGCAGACAATGTTCATGGAGATGGCCCAAGGCTTTTGA 408 49.51 MERHKPGSDSYYTILGVGSDCSAEEIRRAYRRLAMRWHPDRWARRRAAPALLSKAKAKFQQIQQAYSVLSDQRKRALYDAGFYNDEDDDDDEHNEAFYEFMQEMVSLMAKARSEDCKCATMEELQTMFMEMAQGF 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5243338 5244521 - CmoCh15G009830.1 Cmo15g00983 398491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00983 135 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 135 - -
Cmo15g00983 135 SUPERFAMILY Chaperone J-domain 9 88 IPR036869 -
Cmo15g00983 135 Gene3D DnaJ domain 8 134 IPR036869 -
Cmo15g00983 135 SMART dnaj_3 9 74 IPR001623 -
Cmo15g00983 135 ProSiteProfiles dnaJ domain profile. 10 82 IPR001623 -
Cmo15g00983 135 Pfam DnaJ domain 11 79 IPR001623 -
Cmo15g00983 135 PRINTS DnaJ domain signature 12 30 IPR001623 -
Cmo15g00983 135 PRINTS DnaJ domain signature 30 45 IPR001623 -
Cmo15g00983 135 PRINTS DnaJ domain signature 54 74 IPR001623 -
Cmo15g00983 135 CDD DnaJ 11 71 IPR001623 -
Cmo15g00983 135 ProSitePatterns Nt-dnaJ domain signature. 59 78 IPR018253 -
Cmo15g00983 135 PANTHER PUTATIVE, EXPRESSED-RELATED 2 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00983 - - - csv:101214430 189.504
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00983 Cmo-Chr15:5243338 Cmo17g01033 Cmo-Chr17:8792819 7.09E-21 dispersed
Cmo15g00983 Cmo-Chr15:5243338 Cmo12g01054 Cmo-Chr12:9748612 1.40E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g417 . . . . . . . . . . . Cma04g00058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00983 . Cma15g00945 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000888 2 3 1 2 3 3 5 3 3 2 2 3 3 3 3 4 3 4 5 3 3 2 3 3 4 2 2 3 3 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00983 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0