Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00984 ATGGCCACGCAGTTTCAAGTGCCCCTCAACCATTCAACTGAGGATCTATTGGATTCACAAAGTTCCATACATATTCTACTCCTACTCACCAGTTTTGCAATGAGCAGCGAAGTCGTTGGTGATGGCCGGCGGCGTGCTTTAGCGCTGCAACTTCTTGACCTGGTACGTGACTTTGTTCTGATGTCAGGGAGGTCCATCACCGGAGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATTGCGCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTTTGTGGTGGCTTCCGGGACAAGTTTGAGGCATTGACCGACTCTATTGCTTCTTCTTCTTCTTGTTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCAGCAAAACGCCTTCTGTACGCTGCTATGACTTTCTCTGTATACGACGATGACGAGGGTTCTCCGACTCCGACTGAGGGAGGTACCAAAAAATTGGTTCTGCAATTCCATTACGTGACAACCAGACTAGAAACTGCACTCTCAAATCTGCCATTCGACCACTTTTGTGTAGCAGACGAAGTACAAGAACAGGTTGATTTGGTCAGAGCTCAGCTGATGAGAGCATCAAAGAACTATGAGTCTATGTCTGACCCCATACATAAGAAGCTTGAAGCTACAGGTTCTGTAAAAGGAATGATCTTTCATGATGTCAAGACCATGTCTAGTGTTGATGATGCAGATCCAGACTCTCAGCATCGTCCTCCGAACCGCGACGATCTGATCTGTTTCGATTCGGATGAGCTAAAGAACTCGAATTCATGTTTCAACGAGTGTTCAAGTGTTCATTCTGAAATGGAAGATGTTCTATCCATCAAGAGCCAAGATGAAGTTGGGCAGCTTGATGTAATTGAAATTCCTGAGAATTTCTTTTGTCCCATTTCCCTTGAATTAATGATCGATCCTGTCATCATCTCGACCGGACAGACATATGAAAGATCCAACATACAAAAATGGATAGACAGAGGAAATACATCATGTCCAAAGACTCAAGAGCAGCTTCAATCTCTGATCCTCACTCCAAATTTTGCTATGAGAAATTTGATCTCAGAATGGTGTGGAGAACACAATGTTAATTTAGAGAAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGGTTGCCGAAGGATGTTACCAATCAAAACGTTGGTTCGACACCTTTCTTTGGGGTCCGTACAGGAGCAGAAGGCGGCGGTGACCGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAAAAGCCGGAGCAATCCCACAGCTGGTTGTCCTTTTAACTTCAGAAGATGTTGCAACACAAGAGAATGCAATTTCATGCATTTTGAACCTTTCACTTCATGAGCCAAACAAGAGACTTATAATGCTTCATGGTGCATTTTCTTACATTTCCCAAGTCCTCAAATTTGGGAGCATGGAAGGGAGAGAGTGTGCTGCTGGGACGATTTACAGCTTGTCGTTAGCCGACGAAAACAAGGCGATAATCGGGGCGTCGGGCGTGATCCCGGACCTTATAGAAATCCTCCAGATTGGGAGCCCAAGAGGGCAGAAAGATGCTGCAGGAGCTCTGTTGAATTTGTGTATGTACCAAGGGAACAAAGGCAGAGCTTTCAGGGCTGGGATTCTCAAACTATTATTGAAAATGCTCTCTGATTCAAATGGCACATTGGTTGATGACGCTCTCTATATAATGTCAGTTCTTTGCAGCCATCCGGAGGCCAAGGCTGCAATGGGGAATGCCAATTCATTGCTTGTTTTGACCAATGTTCTTAAGAAGGGGTCGTCTCGCAGCAGGGAAAATGCAGTGGCAGTTCTGCTTGCATTGTGTAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGGCTTGGCGCGGCGGTGCCGTTGATGAAACTTTCCGAGGATGGCACGGAGAGAGCGAAACGGAAGGCTGCTTCATTGTTGGATCAACTCAGAAAATCATGA 2034 45.77 MATQFQVPLNHSTEDLLDSQSSIHILLLLTSFAMSSEVVGDGRRRALALQLLDLVRDFVLMSGRSITGAGDVMKKDCTDLIRRIALLIHLAEEITNFCGGFRDKFEALTDSIASSSSCLDCLSEVVGAIQAAKRLLYAAMTFSVYDDDEGSPTPTEGGTKKLVLQFHYVTTRLETALSNLPFDHFCVADEVQEQVDLVRAQLMRASKNYESMSDPIHKKLEATGSVKGMIFHDVKTMSSVDDADPDSQHRPPNRDDLICFDSDELKNSNSCFNECSSVHSEMEDVLSIKSQDEVGQLDVIEIPENFFCPISLELMIDPVIISTGQTYERSNIQKWIDRGNTSCPKTQEQLQSLILTPNFAMRNLISEWCGEHNVNLEKGLTNRKLKKYRSFEDGCRRMLPIKTLVRHLSLGSVQEQKAAVTEIRQLSKSSSDHRVEIAKAGAIPQLVVLLTSEDVATQENAISCILNLSLHEPNKRLIMLHGAFSYISQVLKFGSMEGRECAAGTIYSLSLADENKAIIGASGVIPDLIEILQIGSPRGQKDAAGALLNLCMYQGNKGRAFRAGILKLLLKMLSDSNGTLVDDALYIMSVLCSHPEAKAAMGNANSLLVLTNVLKKGSSRSRENAVAVLLALCKGDWEKLEWLTRLGAAVPLMKLSEDGTERAKRKAASLLDQLRKS 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5248499 5252828 - CmoCh15G009840.1 Cmo15g00984 398492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00984 677 CDD RING-Ubox_PUB 306 348 IPR045210 -
Cmo15g00984 677 SUPERFAMILY RING/U-box 297 374 - -
Cmo15g00984 677 PANTHER U BOX DOMAIN-CONTAINING 54 676 - -
Cmo15g00984 677 SMART arm_5 512 552 IPR000225 GO:0005515
Cmo15g00984 677 SMART arm_5 553 593 IPR000225 GO:0005515
Cmo15g00984 677 SMART arm_5 471 511 IPR000225 GO:0005515
Cmo15g00984 677 SMART arm_5 594 634 IPR000225 GO:0005515
Cmo15g00984 677 SMART arm_5 430 470 IPR000225 GO:0005515
Cmo15g00984 677 SMART Ubox_2 305 368 IPR003613 GO:0004842|GO:0016567
Cmo15g00984 677 Gene3D - 400 677 IPR011989 -
Cmo15g00984 677 SUPERFAMILY ARM repeat 401 674 IPR016024 -
Cmo15g00984 677 Coils Coil 188 208 - -
Cmo15g00984 677 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 54 676 - -
Cmo15g00984 677 Pfam U-box domain 302 373 IPR003613 GO:0004842|GO:0016567
Cmo15g00984 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Cmo15g00984 677 Pfam Armadillo/beta-catenin-like repeat 430 469 IPR000225 GO:0005515
Cmo15g00984 677 Pfam Armadillo/beta-catenin-like repeat 513 551 IPR000225 GO:0005515
Cmo15g00984 677 ProSiteProfiles U-box domain profile. 301 375 IPR003613 GO:0004842|GO:0016567
Cmo15g00984 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 378 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01075 Cmo15g00984 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01075 Cmo-Chr4:5408500 Cmo15g00984 Cmo-Chr15:5248499 0 dispersed
Cmo15g00984 Cmo-Chr15:5248499 Cmo18g00911 Cmo-Chr18:10298233 7.05E-130 dispersed
Cmo15g00984 Cmo-Chr15:5248499 Cmo04g00047 Cmo-Chr4:273414 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00984 - - cmax:111489474 1243.41