Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00993 ATGGGGGATCACTTTGTTTTGCTGGTTGATCGATTGTTGACGGAGACGACATTAGAAGCAGCGATTGAGAGCCGAAAGCGATTGACTGAAGCAACGTCCTCTGCCATGGATGGTTTGAAGGGGGACAGTTCTTGCCCAGAAATGGTGTTTGACAATATACCATTTCCAAAGAAAATTGTGGAATGTAGAATATGCCAGGATGAAGATGAAGACTCGAACATGGAAACACCTTGCTCGTGCTGTGGCAGCCTTAAGTATGCACATCGAAGATGCATACAGAAGTGGTGTAACGAAAAGGGTGATACAATTTGTGAGATATGCCGCCAGGTGGAGGGGAACTGGGAGATTTCTAGAAGGAACTTGGATAGTTCCAGCTATATAGCAATGGTTTCTTCAAACCGTAATGTTGTTGATACCGACTATGATGAGTTCTCAGCTTCTGCTGCAACCAGCGTGCTATGCTGCCATTCATTTGCTATTGTTTTCATGGTTCTTCTGGTTTTGAGGCACTCTCTTCCCCTCATATTCAATGAAAGCGGTGTCGATTTGCCTGCGAAGTTTACTGATCTTTCTACCAATATACGTTATGTTCAAAGTAGTCTCTGCAGTTCATCGCCGTCGACTTCTCGTAAGCGTTCGTATACAATTAGCAGACATCTACATGCCATCCTCTCAGTGATAACTCTATTGTATTAA 696 43.68 MGDHFVLLVDRLLTETTLEAAIESRKRLTEATSSAMDGLKGDSSCPEMVFDNIPFPKKIVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQKWCNEKGDTICEICRQVEGNWEISRRNLDSSSYIAMVSSNRNVVDTDYDEFSASAATSVLCCHSFAIVFMVLLVLRHSLPLIFNESGVDLPAKFTDLSTNIRYVQSSLCSSSPSTSRKRSYTISRHLHAILSVITLLY 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5334547 5336443 + CmoCh15G009930.1 Cmo15g00993 398501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00993 231 CDD RING_CH-C4HC3_MARCH 62 108 - -
Cmo15g00993 231 PANTHER OS01G0121200 PROTEIN 111 179 - -
Cmo15g00993 231 Pfam Protein of unknown function (DUF3675) 106 182 IPR022143 -
Cmo15g00993 231 SMART ringv_2 61 108 IPR011016 GO:0008270
Cmo15g00993 231 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Cmo15g00993 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 115 IPR013083 -
Cmo15g00993 231 SUPERFAMILY RING/U-box 60 109 - -
Cmo15g00993 231 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Cmo15g00993 231 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Cmo15g00993 231 PANTHER OS01G0121200 PROTEIN 1 109 - -
Cmo15g00993 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 111 179 IPR033275 -
Cmo15g00993 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 109 IPR033275 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00993 - - - cpep:111785984 318.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00876 Cmo-Chr14:4645441 Cmo15g00993 Cmo-Chr15:5334547 3.13E-52 dispersed
Cmo15g00993 Cmo-Chr15:5334547 Cmo01g00827 Cmo-Chr1:4424101 4.12E-30 dispersed
Cmo15g00993 Cmo-Chr15:5334547 Cmo04g02202 Cmo-Chr4:16391261 6.34E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g397 . . . . . Bpe10g00871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g00993 . Cma15g00953 . Car15g00897 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000995 1 11 1 2 1 2 5 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 4 2 2 4 5 2 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00993 Cmo_Chr15 FPKM 17.10037 20.20731 31.924786 30.203457 32.491837 33.108849 32.713783 48.018185 46.157494 46.365833