Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00994 ATGGGGAATTATATTTCTTGCTCCTTGGCCACGCCGTTGATCAAGAATTTCAAGGCGGTTAGGGTCGTGCTTCCAGGCGGCGAGGTCCGTCAGTTCCGGGAGTCGGTGAACGCGGCGGAGCTAATGCTCGAATGTCCTACTTACTTTCTCGCCAACGCTCAGTCTCTCCACATCGGCCGCAGATTCTCCGCACTCGCTGCCGACGAGGAATTGGAGTTTGGTAATGTTTATCTCATGTTTCCGATGAAGAGAGTTAACTCCGTTGTCACGGCGGCGGATTTAGCCACCTTCTTCATGGCGGCCAACTCTGCGGCCAGGCGGATTTCGGCCGCTAAGGTTAGGGTTATACATGATAATCGGAATCGAGAATCAGGTGAATCGGAAGCGGAATCGAGGCCGAGAATTAGCGATGAAAATAACGGACCGAGATTGAGCTTGGAAGGAATCGAGGGATTTCCGATGCATCGATTGTCAGTTTGCCGGTCCAGGAAGCCATTGTTGGAGACGATTAAAGAAGAGCATATTAGGGGAAGATAG 537 51.58 MGNYISCSLATPLIKNFKAVRVVLPGGEVRQFRESVNAAELMLECPTYFLANAQSLHIGRRFSALAADEELEFGNVYLMFPMKRVNSVVTAADLATFFMAANSAARRISAAKVRVIHDNRNRESGESEAESRPRISDENNGPRLSLEGIEGFPMHRLSVCRSRKPLLETIKEEHIRGR 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5338480 5339016 - CmoCh15G009940.1 Cmo15g00994 398502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00994 178 Pfam PADRE domain 1 172 IPR025322 -
Cmo15g00994 178 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 1 175 - -
Cmo15g00994 178 PANTHER DUF4228 DOMAIN PROTEIN 1 175 - -
Cmo15g00994 178 MobiDBLite consensus disorder prediction 119 137 - -
Cmo15g00994 178 MobiDBLite consensus disorder prediction 119 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00994 - - - csv:101213469 292.352
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02405 Cmo-Chr4:17911562 Cmo15g00994 Cmo-Chr15:5338480 6.64E-50 dispersed
Cmo08g00454 Cmo-Chr8:2814009 Cmo15g00994 Cmo-Chr15:5338480 2.26E-12 dispersed
Cmo15g00994 Cmo-Chr15:5338480 Cmo20g00874 Cmo-Chr20:4420855 1.02E-07 dispersed
Cmo17g01013 Cmo-Chr17:8690516 Cmo15g00994 Cmo-Chr15:5338480 1.10E-07 dispersed
Cmo15g00994 Cmo-Chr15:5338480 Cmo15g00761 Cmo-Chr15:3736308 1.76E-51 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g396 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0786 Cone19ag0790 . . . . . . . . . . . . . . . . Cmo15g00994 . Cma15g00954 . Car15g00899 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009169 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 0 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00994 Cmo_Chr15 FPKM 14.176229 19.679956 21.498934 21.840298 14.847507 8.351068 14.878835 18.318548 21.215092 20.941055