Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00996 ATGCACCCATATAATCGGCTGCCCAGCAGTGGCCACTCAACTCCGTCACCGCCGCCCTCTCCTCTCCGGTCCCCTCGTCTCCGCCACTCTCGCTCTAAGGGTGCCCGCTTCACTCAAGCTCAGCAACCGCCTCGCTCTTTTCCCCAGCGACTTGCCTGGTTAATCCTCTCCGTTTTACTTCGTCGTCAAGGGATCTTCCTTTTTGCCCCTCTAATCTACATCTCCGGTATGCTTCTTTATATGGGCACTGTCTCTTTTGATGTCGTTCCAGTCATCAATCATCGCCCTGCTCCTGGCTCTGTTTATCGAAGTCCCCAACTCCTCGCCAAGCTTCGCTCCGAGATGGATGCTGACAACACTTCCACTGATGCGATATCAACGATATGGAAACACTCCTATAAGGGTGGTCAGTGGAAACCATGTATCAACAATTCCTCAGGAGGCCTACCTGAGTCAAATGGATATATTTATGTTGAGGCAAATGGCGGTTTAAATCAGCAGAGAACATCGATATGCAATGCAGTTGCTGTGGCTGGCTATCTTAATGCAACGCTTGTAATTCCTAATTTTCATTTCCACAGCATTTGGAGAGATCCTAGCAAGTTCAGCGAAATATATGATGAGGAATATTTTATCAAGACCTTAGAGAATGATGTACGCATTGTTAACAAGATTCCGGAATACATAATGGAACGCTTTGACCACAACATGACTAATGTCTACAACTTCAGAATAAAGGCATGGTCGTCCATTCAATATTACAAGGACATGGTGCTTCCGAGACTACTTGAAGAACTGGTTATAAGAATTTCACCTTTTGCAAATCGGTTGTCGTTTGATGCTCCTCCTGCTGTTCAACGGCTTCGATGTTTAGCAAATTATAAAGCGCTAAGGTTCGCTAATCCCATTTTATCCTTGGGAGAGATTTTGGTTGCGAGGATGAGAGAACGCAGTGCCAGTAACGGTGGCAAGTATATTTCTGTACATCTTCGCTTTGAGGAGGATATGGTTGCGTTCTCGTGTTGTATTTTCGATGGTGGACATAAAGAGTTGGAAGACATGAAAGCAGCGAGAGAAAAAGGATGGAAAGGGAAATTCACAAAACCGGGCAGAGTCATACGTCCTGGTGCCATAAGGATTAACGGAAAATGTCCGATGACTCCATTAGAGGTTGGGTTGATGCTCAGGGGAATGGGATTTGACAATAGCACATTTATTTATTTGGCATCGGGAAAGATATACGACGCGGAGAGAAATATGGCTCCGCTTTTGGAGATGTTTCCGAATCTGCTTACGAAGGAAATGCTGGCATCACCTGAAGAACTTTCCCCATTCAAGAACTTCTCTTCGAGGATGGCTGCTATAGACTATACGGTTTGTCTCCACAGCGAGGTGTTCGTGACGACACAGGGAGGCAACTTCCCTCATTTTCTGATGGGTCATAGAAGATATTTGTACGGCGGACACTCCAAAACTATCAGGCCGGACAAACGCAAGTTGGCATTGCTTTTTGATAACCCTGCCATTGGGTGGAAAAATTTCAAGAGACAAATGTTGAGCATGAGGAGTCATAGTGATTCCAAGGGATTTGATCTCAAAAGGCCGAACGACTCGATATACACCTTCCCTTGTCCAGATTGCATGTGTTTTACAAACAAATCAAACGATACGAAATCATCGTTAGCCTCGTGA 1692 45.39 MHPYNRLPSSGHSTPSPPPSPLRSPRLRHSRSKGARFTQAQQPPRSFPQRLAWLILSVLLRRQGIFLFAPLIYISGMLLYMGTVSFDVVPVINHRPAPGSVYRSPQLLAKLRSEMDADNTSTDAISTIWKHSYKGGQWKPCINNSSGGLPESNGYIYVEANGGLNQQRTSICNAVAVAGYLNATLVIPNFHFHSIWRDPSKFSEIYDEEYFIKTLENDVRIVNKIPEYIMERFDHNMTNVYNFRIKAWSSIQYYKDMVLPRLLEELVIRISPFANRLSFDAPPAVQRLRCLANYKALRFANPILSLGEILVARMRERSASNGGKYISVHLRFEEDMVAFSCCIFDGGHKELEDMKAAREKGWKGKFTKPGRVIRPGAIRINGKCPMTPLEVGLMLRGMGFDNSTFIYLASGKIYDAERNMAPLLEMFPNLLTKEMLASPEELSPFKNFSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLMGHRRYLYGGHSKTIRPDKRKLALLFDNPAIGWKNFKRQMLSMRSHSDSKGFDLKRPNDSIYTFPCPDCMCFTNKSNDTKSSLAS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5360888 5366987 + CmoCh15G009960.1 Cmo15g00996 398504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00996 563 MobiDBLite consensus disorder prediction 1 43 - -
Cmo15g00996 563 PIRSF UCP009360 26 553 IPR024709 -
Cmo15g00996 563 PANTHER PROTEIN ESMERALDA 1 1 561 - -
Cmo15g00996 563 CDD O-FucT_plant 155 492 IPR024709 -
Cmo15g00996 563 Pfam GDP-fucose protein O-fucosyltransferase 155 485 IPR019378 -
Cmo15g00996 563 PANTHER - 1 561 IPR024709 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00996 - - - csv:101205140 1093.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01453 Cmo-Chr1:11331371 Cmo15g00996 Cmo-Chr15:5360888 0 dispersed
Cmo05g00573 Cmo-Chr5:2810180 Cmo15g00996 Cmo-Chr15:5360888 2.39E-99 dispersed
Cmo09g00804 Cmo-Chr9:4114324 Cmo15g00996 Cmo-Chr15:5360888 0 dispersed
Cmo09g01325 Cmo-Chr9:11998673 Cmo15g00996 Cmo-Chr15:5360888 6.44E-20 dispersed
Cmo14g01951 Cmo-Chr14:14414203 Cmo15g00996 Cmo-Chr15:5360888 6.37E-88 dispersed
Cmo15g00996 Cmo-Chr15:5360888 Cmo18g00760 Cmo-Chr18:9217803 4.97E-106 dispersed
Cmo09g01324 Cmo-Chr9:11986839 Cmo15g00996 Cmo-Chr15:5360888 2.41E-164 transposed
Cmo13g00620 Cmo-Chr13:6732085 Cmo15g00996 Cmo-Chr15:5360888 5.52E-109 transposed
Cmo15g00996 Cmo-Chr15:5360888 Cmo04g02225 Cmo-Chr4:16620272 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g433 . Blo16g00730 Bda01g01817 Bda11g00164 . . . . . . . . . . . . Cpe01g01848 . . . . . . . . . . . . . . Cone13ag0759 Cone19ag0763 Cone6ag0395 Cone9ag0421 . Csa05g02022 . . . . . Bda11g00164 . Bpe02g01993 Bma01g00466 . . . Cmo15g00996 . Cma15g00957 . Car15g00901 Cpe13g00368 . Bhi12g00905 . . . . . . Cla01g00610 Cam01g0638 Cec01g0630 Cco01g0657 Clacu01g0628 Cmu01g0601 Cre09g1901 Lsi09g00661 . Chy09g00850 Cme09g01383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004536 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00996 Cmo_Chr15 FPKM 14.625247 18.916409 22.570374 21.953117 28.444197 28.97575 26.452312 17.369743 15.459444 15.669215