Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g00997 ATGATCAGAGTGTTGCTGGCATTGAGAATGATTCGGCTTGTTACTGAAACTCTGATGGGTATCTATAATAAATCGAACTCTAGTAGAGCCCTTGAAGGTCTGCATGGTGTTGCTGTGGTGCCTGGTTCACAACAATTCGCCTTGGAAAAGGCTTCACGAGATGGGGATTTTTCTTCATTGAGTTGTGGGAGTTCATCAGCTTTAAGTGATCGGAATATGGCGGAGAGGGTGGCTAACGTGCTTACCTCACTTCCTTTTATTGCTCTTGGAATTCAGGCACCAAGGTGCTTGTCTGATTATTTGGCTGTTTACTTGGAACACAGGAAGAATTTCCCAACGAGGCTATATGCTAATTCATTGATTGGAGTAGGAGTTGCTTCAAATTTTCTCATGTCTCAAACTATATTGCAGTGTCTGACAGGAGCTTTAAGAAACGACAACCCGAGGATGTTGATGGCTGCATCTGCATTTCTATTGCCTTTGAGGCCCTTTACGGTTTCAGCACTTCACACTGGGATGATGGAGGTAATGTTTGCAAAAAGAGCTTTGAAGGATCCAGATTTGAGGATGGCTCACAACGTGCATAAAGTGTCGACGCTGTTAGGTGGTGTTCTTTTCGTTGCTGATGATGCTTTGCCCCAAACTCCATTCATTCATGCAGCTTGGCATCTTGCTGCTGCTGTTGGTGTTGGAACCTGCAATAAGCTTCTTGAGTGA 717 44.35 MIRVLLALRMIRLVTETLMGIYNKSNSSRALEGLHGVAVVPGSQQFALEKASRDGDFSSLSCGSSSALSDRNMAERVANVLTSLPFIALGIQAPRCLSDYLAVYLEHRKNFPTRLYANSLIGVGVASNFLMSQTILQCLTGALRNDNPRMLMAASAFLLPLRPFTVSALHTGMMEVMFAKRALKDPDLRMAHNVHKVSTLLGGVLFVADDALPQTPFIHAAWHLAAAVGVGTCNKLLE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5367188 5370905 - CmoCh15G009970.1 Cmo15g00997 398505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g00997 238 PANTHER FOLD PROTEIN 67 129 - -
Cmo15g00997 238 PANTHER FOLD PROTEIN 134 238 - -
Cmo15g00997 238 PANTHER FOLD PROTEIN 67 129 - -
Cmo15g00997 238 PANTHER FOLD PROTEIN 134 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g00997 - - - csv:101204891 308.916
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00997 Cmo-Chr15:5367188 Cmo04g02224 Cmo-Chr4:16618581 6.06E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g436 Blo01g00756 . . . . . . . . . . . . . . . Cpe01g01847 . . . . . . . . . . . . . . Cone13ag0758 Cone19ag0762 Cone6ag0393 Cone9ag0419 . Csa05g02021 . . . . . . . . . . . . Cmo15g00997 . Cma15g00958 . Car15g00902 Cpe13g00367 . Bhi12g00907 . . . . . . Cla01g00611 Cam01g0639 Cec01g0631 Cco01g0658 Clacu01g0629 Cmu01g0602 Cre09g1900 Lsi09g00662 . Chy09g00515 Cme09g01382
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006606 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g00997 Cmo_Chr15 FPKM 7.231643 5.983114 39.231194 38.982933 1.729394 1.929866 1.963779 507.688538 547.470154 473.187073