Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01000 ATGAAGAGGGAGCATCACTATCTTCATCCTCGTCCGGAGCCGCCTTCCGTGGCTACTGGCTCTAATCGGGAGAGTTATTTGAACACTGGTAAGGCTAAGCTTTGGGAGGAGGAGGTACAGCTCGATGGAGGAATGGATGAGCTTCTTGCTGTTTTAGGTTACAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTGGAACAGCTTGAAGAAGCTATGTGTCAAGTTCAGGATACTGGCCTTTCGCATCTCGCTTTCGACACTGTTCATTATAATCCCTCTGATCTGTCGACTTGGGTTGAAAGTATGCTCACTGAGCTCCATCCGCCGCCCCCTACCTCGCATCTGGACGATTCATCGTTTTTAGCTCCGGCGGAATCCTCCACCATCGCTAACATTGATTATGAACCTCAACTGCAAACCAGCAGCAGGATTTTCGAGGAGTCTTCTAGTTCGGATTATGACCTTAAAGCTATTACGGATAGCGCGATTTATTCACCGAGAGAGAGTAAGCGTTTGAAAGCCTCCGAGTCGGACACGGATGTGTTCTCCACCTCTGCGATTGGGGCTTCTAATTCTGCAACTCGCCCAGTTATTCTCGTCGATTCGCAGGAGAACGGAATTCAACTGGTTCATGCTCTGATGGTCTGTGCTGAAGCCGTACAGCAGAATAATCTGAATCTAGCGGAGGCTCTGGTAAAGCGAATCGATTACTTAGCGGTTTCTCAAGCCGGAGCGATGAGGAAAGTCGCCACGTTCTTCGCCGAAGCATTGGCACGCCGAATCTATAGGCTCTGCCCTGAGAATCCCCTCGATCGTTCAGTGCTCGATATGCTTCAGATGCATTTCTACGAGAGCTGTCCCTATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTCATCGATTTCTCGATGAACCAGGGGATGCAGTGGCCAGCTTTGATTCAAGCTCTAGCTCTACGACCGAGTGGTCCTCCTACCTTCCGGCTCACCGGTATCGGCCCTCCGGCGCCGGATAACTCCGATTACCTCCAAGATGTGGGATGGAAGCTCGCCAAATTCGCCGAAACCCTCCATGTAGAGTTCGAATACAGAGGATTTGTAGCGAACAGTTTGGCGGATCTGGACGCATCGATGCTGGAACTCCGACCGAGCGAGGTGGAGTCTGTGGTAGTGAACTCGGTGTTCGAGCTGCATCAGCTACTGGCTCGGCCGGGGGCAATTGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCGTGACGGTGGTAGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGAACGATTCACTGAGTCACTCCATTACTACTCGACGCTGTTTGACTCGTTGGAGTGCTCCCCCAACAACCAAGACAAGATGATGTCGGAAATGTACCTTGGGAAACAAATCTGCAATGTGGTAGCTTGTGAAGGTGCCGACCGAGTGGAGCGCCACGAAACCCTGACTCAGTGGCGCACTCGGTTAACCTCCGCCGGGTTCGATCCCATCCACCTCGGCTCAAACGCATTCAAGCAAGCGAGTATCCTCCTCGCCCTGTTTGGCAGCGGCGAAGGGTACCGGGTAGAAGAGAACGAGGGATCACTAATGCTGGGATGGCACACCCGCCCCCTCATCGCCACCTCCGCCTGGAAACCCGGCAACAACCCGGTGGTCGCTCACTGA 1743 52.95 MKREHHYLHPRPEPPSVATGSNRESYLNTGKAKLWEEEVQLDGGMDELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQVQDTGLSHLAFDTVHYNPSDLSTWVESMLTELHPPPPTSHLDDSSFLAPAESSTIANIDYEPQLQTSSRIFEESSSSDYDLKAITDSAIYSPRESKRLKASESDTDVFSTSAIGASNSATRPVILVDSQENGIQLVHALMVCAEAVQQNNLNLAEALVKRIDYLAVSQAGAMRKVATFFAEALARRIYRLCPENPLDRSVLDMLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNQGMQWPALIQALALRPSGPPTFRLTGIGPPAPDNSDYLQDVGWKLAKFAETLHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHQLLARPGAIEKVLSVVKQMKPEIVTVVEQEANHNGPVFVERFTESLHYYSTLFDSLECSPNNQDKMMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLTSAGFDPIHLGSNAFKQASILLALFGSGEGYRVEENEGSLMLGWHTRPLIATSAWKPGNNPVVAH 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5387954 5389696 - CmoCh15G010000.1 Cmo15g01000 398508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01000 580 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 25 572 IPR005202 -
Cmo15g01000 580 MobiDBLite consensus disorder prediction 1 25 - -
Cmo15g01000 580 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Cmo15g01000 580 Coils Coil 54 74 - -
Cmo15g01000 580 Pfam GRAS domain family 212 571 IPR005202 -
Cmo15g01000 580 ProSiteProfiles GRAS family profile. 203 571 IPR005202 -
Cmo15g01000 580 Gene3D - 44 109 IPR038088 -
Cmo15g01000 580 PANTHER DELLA PROTEIN GAI1-RELATED 25 572 IPR030006 GO:0003712|GO:0005634
Cmo15g01000 580 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02397 Cmo-Chr4:17862439 Cmo15g01000 Cmo-Chr15:5387954 0 dispersed
Cmo15g00767 Cmo-Chr15:3765077 Cmo15g01000 Cmo-Chr15:5387954 0 dispersed
Cmo15g01000 Cmo-Chr15:5387954 Cmo02g00224 Cmo-Chr2:1031828 3.03E-73 dispersed
Cmo11g00583 Cmo-Chr11:2811966 Cmo15g01000 Cmo-Chr15:5387954 5.02E-149 transposed
Cmo15g01000 Cmo-Chr15:5387954 Cmo04g02220 Cmo-Chr4:16591683 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11192 PF03514 GRAS 3.20E-135 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01000 K14494 - csv:101204164 1041.57