Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01001 ATGCCTCGAAAGCCAACAAAGCGGCGCCAGCTGCTGGGAACTCGTCCTTTAACTTTTTCCTCATTTGCTCGCGCTTCTTGTATGGTGAGGAATCAAATTTCGAAGTCAAAATTAATGAAATCTCACCCTAAACATGAAGGTAATGATTTTATTAGGAATAGTCCTGAGCCCCAGAGTGAATCATCTGACTCTTCTTCCAGCGATGAAGAGTTTGAAGAAGTTCAAGCAGACTTTGCCTTTTTTGATCCAAAACCCGATGATTTTCATGGGGTGAAGACATTGCTGCAAAACTACCTAGATGACACACAGTGGGATATAAGTGGATTTTCTGATTTAATATTAGGACAAACCACAGTAGGTTCTGTTGTCAAAGTTGAGGGAGATGAAGATAATGGAGTATTCTCTTTTATCACAGCCCTTAACTTGGCAAGATATAAGGACAGTAGATCTATAATGGAGCTGAAGGAGTATCTCCTCAAAGTTTGCCCGGACAGGGATATAAAGAATGACTTGAAACAACTTCTGGAGGAGCAAGCATTTAGTGTTGGTCTCATAGTCTCTCAGAGAATCGTGAATCTTCCTCCTCAACTTCTGCCACCACTTTATGATGCCCTTTTTGATGAAATATCATGGGCTATTGAGGACGAGCCAACCAAAGAGCTCCAGGATTCCTTCCGCTTCAAATTGCATATTTTAGTCAGTAAAATTTACAAGCTCAAGAATACAAATCATAAGAAAAAAGCGACTCCTGAAACAGAAGAGTCAATTATATATGTAAAGGCAGAAGATGAAATATTTCACAAGTTGTGTTTATGGTCCTTCTGCTTTCCCTTGCACGTCCAGCCACAAACAACTAACGAGCTAAAAGGTTACCAGTTAATGGGAATAGTAATGGCTGTTGAAGCAAGCAAAGTTCCCACATTTCGAGATGAGTTAAAATCTTTAATTAGTGAATCCTAG 960 39.79 MPRKPTKRRQLLGTRPLTFSSFARASCMVRNQISKSKLMKSHPKHEGNDFIRNSPEPQSESSDSSSSDEEFEEVQADFAFFDPKPDDFHGVKTLLQNYLDDTQWDISGFSDLILGQTTVGSVVKVEGDEDNGVFSFITALNLARYKDSRSIMELKEYLLKVCPDRDIKNDLKQLLEEQAFSVGLIVSQRIVNLPPQLLPPLYDALFDEISWAIEDEPTKELQDSFRFKLHILVSKIYKLKNTNHKKKATPETEESIIYVKAEDEIFHKLCLWSFCFPLHVQPQTTNELKGYQLMGIVMAVEASKVPTFRDELKSLISES 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5402358 5405847 + CmoCh15G010010.1 Cmo15g01001 398509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01001 319 Pfam BCCIP 73 266 IPR025602 -
Cmo15g01001 319 PIRSF BCP1 26 319 IPR025602 -
Cmo15g01001 319 PANTHER BRCA2 AND CDKN1A INTERACTING PROTEIN 39 317 IPR025602 -
Cmo15g01001 319 PANTHER BRCA2 AND CDKN1A-INTERACTING PROTEIN 39 317 - -
Cmo15g01001 319 MobiDBLite consensus disorder prediction 33 68 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01001 K15262 BCP1, BCCIP; protein BCP1 - csv:101218410 483.411
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo15g01001 . Cma15g00961 . Car15g00907 Cpe13g00363 . Bhi12g00916 . . . . . . Cla01g00618 Cam01g0646 Cec01g0638 Cco01g0664 Clacu01g0634 . . Lsi09g00668 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007192 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 5 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01001 Cmo_Chr15 FPKM 1.312923 1.229578 2.08799 3.615357 1.432271 1.223526 1.256688 1.211741 1.60097 1.797948