Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01004 ATGGCCGCCAACAAATTTGCCACCATCTTGCACCGAAACTCCAACAAGTTCACCCTTATTTTAGTCTACGCTCTTCTCGAATGGGTTCTCATCTTTCTTCTTCTTCTTCAAGCCCTTTTCTCTTACCTGATCGTTAAATTTGCAGAGTGGTTTGGGCTGAAGCGCCCCTGTTTGTGGTGTTCCAGAGTGGACCATGTGTTCGAGCCTGGGAGAAAGCGTTCTTACAGAGATCTTCTTTGTGAAGCTCATTCCTTTGAGATTTCTAATCTGGGTTACTGTTCGAATCATCGGAAACTCACTGAGTTTCGAGATTTGTGCGAGGATTGCTCGTCTTCTTCTAAGTCCGACGAGTTCTATCAGATTCCTAAGAGCTTTCCCTTTTTCGGTGATGAGAAGGAGGGTTTGAAGAGCTGTTCTTGCTGTGGGGAGAGCTTGAAGAATCGTTTGTTTTCTCCTTGTATTTTGATTAAGCCCAATTGGGGGGATTTGGATTATGCCCAGAAGGGGGATTTTATTTCTGAGGCGGAAATTGATGTTCAATCGGAAGATGTCATCGGAGACAGGGAAATCTCCAAGGTTTCCGGCGAGGAAGAGGCTGAGAAGAACTCCACTTGCTCTGTTTGTGGCTTTGGCTGTAAAGATTCAGCGGTTCATGAGGATGACGATAGAGCTGAAGATCTGAGCTCTTGTAATCAGAAACCAGTTCAAGTTGGTTGTGAGAAAGAGGATGAATTGGCTGAGATTTCTCCAAATCATCTTGAGTTCTACATTGACCGGGGCGACGATCGGCGGCTGATTCCAGTTGATTTGATCAACTTTTCGGCCTCCGAGGATGACCACAACAATGACAACGACAACGACAACATCCTTAGCCAAGTGAAAGATGAGGAACAAGGACAAGAGGATTGTGGGAATGAAGATGTCGTTTTGGACTTTGTCTCCCACTTTGAGAATCAAGATTGGGATGTTGCAGAGGTGGAAGCCATGGATGTGGAGGAGAGTAGCAAAAGCCCCTCTGGCTATGAAGATCCATCAATGAGAGAAGAACAAGCTGAGGCTTCCATTGATGCTCATAAAGAAGGCCTTGAAGAATTGGCAGTGGCAACAAGAGAGCCAGACTCAGATCTTCATCAAGATTTACACATGTGGAATGATGAACTTGAGGTAGAGATTTCGATTGGGACGAATATTCCTGATCGTCCCGATCACGAACCCATCGGCGACAGTCAAACTCAAACCGACCTTCCTCCACATTCTGATGCACAAGAAGATCCTTCCCCAAGTTCATCATTGGAATTTGACACTATGCAAGATTCTAACAAAGCTCGGAAATCTGAGCTCGACGAGGAAGTCGAGGAAGTCGAGGAAGCCGAGGAAGCTAACGAAGAGGTAGAGTTCAAGATCTTGTCCGTGGAAACGAGTTCTCAACCGTTGGACGATCACAAACCGTTGAGTTCTGAGCTCAATGAGAATGAAGAAGAAGATAAAGTTCCTGATACACCCACTTCAATGGATAGTTTCCATCAGCTACACAAGAAGCTGCTATTACTCGACAGAAAGGAATCTGGAACGGAAGAGTCGTTGGATGGAAGCATCATAAGCGAGACCGAAAGCGGGGATGGAGTATTGACGATCGAGAAGTTGAAGTCAGCGTTGAGAACGGAAAGAAAGGCATTGAATGCGTTATATGCAGAGCTAGAAGAAGAGAGAAGTGCTTCAGCCATAGCAGCCAACCAGACAATGGCAATGATCAATAGGCTTCAAGAGGAGAAAGCAAGCATGCAAATGGAAGCTTTGCAGTACCAAAGAATGATGGAGGAGCAATCCGAGTATGACCAGGAAGCTTTACAGCTTTTGAACGAGCTCGTCGTAAAGAGGGAAAAGGAAAAGCAAGAACTCGAGAAAGAACTCGAAGTTTACCGAAAAAAGCTTCAAGATTATGAAGCTAAAGAGAAAATAGCATTGTTAAGGAACAGAAAAGAAGGTAGCTTCCAAAGTAGACATTCTTCGGTTTCTTGTAGCAATGCCGATGATAGCGATGGGCTATCGATCGATTTGAACACCGAAGCAAAGAAAGACGAAGATTTATGTTCTAACCAAGAAACGGAGAATCAAAACACCCCGGCTGAGGCAGTCCTTTATTTGGACGAAACCATGGCGAATTTCGAGGAAGAAAGGCTGTCCATTCTTGAGGAGCTGAAGTTGTTGGAAGAGAAGCTTTTCACTTTAACTGATGAAGAACAACAATTAGAAGACGTTGTACATTATTGTGAACAGAATGGTAATGGCTACCACAAGAACTCGGATTATACCACTGAAACAAACGGATTCGAAAACGGTCACCATTTGAACGGAAAACATTATCCCGAGAGAAGAGCGATGAGCACGAAAGCCAAACGACTTCTTCCCCTTTTCAATGATGCAGTCGATGCTGATATTGAAGACGTAACAAACAGAGAAGAACAAACTTTCGACTCCATTTCTGTCAACAAATTCGATACAGAATTCAGGAGGGTTGCTGTTGAGGAAGAGGTCGATCACGTGTATGAGAGATTACAAGCACTCGAAGCAGATAGGGAGTTTCTAAAGCATTGCATTGGCTCCATAAAAAAAGGAGACAAAGGCATAGAGCTTCTCCAAGAGATCTTACAGCATCTCCGCGATCTAAGGAGCGTCGATCTCCATTTGAAGAACATGGGAGACAGTGTCCTAGCATGA 2718 44.44 MAANKFATILHRNSNKFTLILVYALLEWVLIFLLLLQALFSYLIVKFAEWFGLKRPCLWCSRVDHVFEPGRKRSYRDLLCEAHSFEISNLGYCSNHRKLTEFRDLCEDCSSSSKSDEFYQIPKSFPFFGDEKEGLKSCSCCGESLKNRLFSPCILIKPNWGDLDYAQKGDFISEAEIDVQSEDVIGDREISKVSGEEEAEKNSTCSVCGFGCKDSAVHEDDDRAEDLSSCNQKPVQVGCEKEDELAEISPNHLEFYIDRGDDRRLIPVDLINFSASEDDHNNDNDNDNILSQVKDEEQGQEDCGNEDVVLDFVSHFENQDWDVAEVEAMDVEESSKSPSGYEDPSMREEQAEASIDAHKEGLEELAVATREPDSDLHQDLHMWNDELEVEISIGTNIPDRPDHEPIGDSQTQTDLPPHSDAQEDPSPSSSLEFDTMQDSNKARKSELDEEVEEVEEAEEANEEVEFKILSVETSSQPLDDHKPLSSELNENEEEDKVPDTPTSMDSFHQLHKKLLLLDRKESGTEESLDGSIISETESGDGVLTIEKLKSALRTERKALNALYAELEEERSASAIAANQTMAMINRLQEEKASMQMEALQYQRMMEEQSEYDQEALQLLNELVVKREKEKQELEKELEVYRKKLQDYEAKEKIALLRNRKEGSFQSRHSSVSCSNADDSDGLSIDLNTEAKKDEDLCSNQETENQNTPAEAVLYLDETMANFEEERLSILEELKLLEEKLFTLTDEEQQLEDVVHYCEQNGNGYHKNSDYTTETNGFENGHHLNGKHYPERRAMSTKAKRLLPLFNDAVDADIEDVTNREEQTFDSISVNKFDTEFRRVAVEEEVDHVYERLQALEADREFLKHCIGSIKKGDKGIELLQEILQHLRDLRSVDLHLKNMGDSVLA 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5438704 5441784 + CmoCh15G010040.1 Cmo15g01004 398512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01004 905 PANTHER MYOSIN-BINDING PROTEIN 3 1 901 - -
Cmo15g01004 905 Coils Coil 719 753 - -
Cmo15g01004 905 PANTHER MYOSIN-BINDING PROTEIN 2 1 901 IPR039306 GO:0017022
Cmo15g01004 905 Coils Coil 838 858 - -
Cmo15g01004 905 Coils Coil 437 474 - -
Cmo15g01004 905 Coils Coil 545 572 - -
Cmo15g01004 905 MobiDBLite consensus disorder prediction 483 501 - -
Cmo15g01004 905 MobiDBLite consensus disorder prediction 408 436 - -
Cmo15g01004 905 MobiDBLite consensus disorder prediction 342 386 - -
Cmo15g01004 905 Coils Coil 577 650 - -
Cmo15g01004 905 MobiDBLite consensus disorder prediction 468 482 - -
Cmo15g01004 905 ProSiteProfiles GTD-binding domain profile. 543 641 IPR007656 -
Cmo15g01004 905 Pfam Zein-binding 547 637 IPR007656 -
Cmo15g01004 905 MobiDBLite consensus disorder prediction 328 504 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01004 - - - cmos:111444983 1694.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01948 Cmo-Chr14:14402780 Cmo15g01004 Cmo-Chr15:5438704 1.25E-18 dispersed
Cmo15g01004 Cmo-Chr15:5438704 Cmo19g00064 Cmo-Chr19:369184 5.49E-32 dispersed
Cmo15g01004 Cmo-Chr15:5438704 Cmo04g02218 Cmo-Chr4:16553195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g461 . . . . . . . . . . . . . . . . Cpe01g01841 . . . . . . . . . . . . . . . . Cone6ag0387 Cone9ag0414 . Csa05g02013 . . . Blo11g00974 . . . . . . . . Cmo15g01004 . Cma15g00963 . Car15g00909 Cpe13g00361 . Bhi12g00920 . . . . . . Cla01g00620 Cam01g0648 Cec01g0640 Cco01g0666 Clacu01g0636 Cmu01g0609 Cre09g1892 Lsi09g00670 . Chy09g00840 Cme09g01372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006446 1 3 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01004 Cmo_Chr15 FPKM 23.195929 30.100452 64.798317 67.22541 25.239349 28.875832 30.221903 10.24494 12.993906 8.934328