Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01007 ATGGTTCGCTTCAGTGTCACCAGGAAGCAGACCGCCCCTATCGATGGCCAGAAGCCCGGTACTTCTGGCCTCCGCAAGAAGGTTAAAGTATTCATTCAACCAAACTACTTGGAGAATTTTGTTCAGGCAACATTTAATGCATTGACTGCTGAAAAAGTCCGAGTTCATAATTTGTTTCTTATGGGTTCTATCAGTTCATCATTACAAACTCCTAATCTTCAGCTGTTTAGAATTGATGGTGGCTTTGTGCCTGGCCTGACAAAGGCATTAGGGGCTACACTTGTTGTTTCTGGAGATGGACGCTATTATTCAAAGGATGCTATTCAGATTATAATCAAGATGGCTGCAGCAAATGGGGTACGGCGTATTTGGGTTGGTCAAAATGGTTTGCTTTCAACTCCTGCTGTGTCTGCTGTCATACGTGAAAGAGTTGGGGTTGATGGATCCCGATCATCAGGAGCATTTATTTTGACTGCAAGTCACAATCCAGGAGGCCCCAATGAGGATTTTGGGATCAAATACAACATGGAAAATGGTGGCCCTGCTCCAGAAGGAATTACTGATAAGATCTATGAAAACACAAAATCAATAAAGGAGTACTTAATTTCTGAAGATCTACCTAACGTGGATATTTCCGCAATAGGTATTTCTAGCTTTGGCGGACCTGAAGGACAATTTGACGTTGAAGTTTTTGATTCTGCCAGTGACTATGTGAAGTTAATGAAGTCAATATTTGATTTTGAATCTATCCGCAAGCTTCTATCCTCTCCCAAATTCTCATTCTGTTATGATGCTCTACACGGTGTTGCTGGAGCTTATGCAAAACGTATTTTTGTGGAAGAGCTCGGTGCAAAAGAAAGCTCATTACTGAACTGTGTACCTAAGGAGGACTTTGGAGGAGGTCATCCGGACCCCAATCTGACTTATGCCAAGGAATTGGTTGCTCGTATGGGATTGGGTAAATCAAGCTCTGGACAAGAACCTCCAGAATTTGGTGCTGCTGCTGATGGTGATGCAGATCGCAATATGGTCCTTGGTAAAAGGTTTTTTGTCACTCCTTCAGACTCTGTTGCCATTATTGCTGCTAATGCTGTTGAAGCTATTCCGTACTTCTCTGGTGGTTTGAAGGGTGTCGCCAGGAGCATGCCGACCTCTGCTGCACTAGATGTGGTTGCCAAAAACTTGAACTTGAAGTTTTTTGAGGTGCCCACTGGCTGGAAATTTTTTGGTAATTTAATGGATGCAGGAATGTGCTCCGTCTGTGGGGAAGAGAGTTTTGGAACTGGATCTGACCATATCCGTGAGAAAGATGGAATCTGGGCAGTTTTGGCTTGGTTATCTATTCTTGCTTATAAAAACAAGGCAAACCTTGAGAGTGGAAAGCTTGTGACAGTCGAAGACATAGTTCGCCAACACTGGGCCACCTATGGTCGTCATTATTATACTAGATACGATTATGAGAACGTTGACGCTGGAGCAGCAAAGGAACTGATGGCGAATCTGGTGAAGCTGCAATCTTCACTTGCCGAAGTTAATGGAATTATCAAGGGAGTTCGTTCAGATGTTTCAAAGGTTGTCCATGGTGATGAATTTGAGTATAAAGATCCTGTTGATGGTTCCATCTCAAAGCATCAGGGTATTCGATATTTGTTTGAAGACGGTTCACGACTGGTCTTCCGCCTGTCTGGAACTGGCTCTGAAGGCGCAACTATTCGGCTCTACATTGAGCAATATGAGAAAGATCCATCAAAAACTGGGAGAGATTCTCAGGAAGCTCTCGCTCCTCTGGTGGAAGTTGCTCTTAAGCTCTCAAAAATGCAAGAATTTACCGGCCGATCTGCTCCTACCGTCATTACTTAA 1860 43.6 MVRFSVTRKQTAPIDGQKPGTSGLRKKVKVFIQPNYLENFVQATFNALTAEKVRVHNLFLMGSISSSLQTPNLQLFRIDGGFVPGLTKALGATLVVSGDGRYYSKDAIQIIIKMAAANGVRRIWVGQNGLLSTPAVSAVIRERVGVDGSRSSGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDKIYENTKSIKEYLISEDLPNVDISAIGISSFGGPEGQFDVEVFDSASDYVKLMKSIFDFESIRKLLSSPKFSFCYDALHGVAGAYAKRIFVEELGAKESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSSSGQEPPEFGAAADGDADRNMVLGKRFFVTPSDSVAIIAANAVEAIPYFSGGLKGVARSMPTSAALDVVAKNLNLKFFEVPTGWKFFGNLMDAGMCSVCGEESFGTGSDHIREKDGIWAVLAWLSILAYKNKANLESGKLVTVEDIVRQHWATYGRHYYTRYDYENVDAGAAKELMANLVKLQSSLAEVNGIIKGVRSDVSKVVHGDEFEYKDPVDGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMQEFTGRSAPTVIT 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5565856 5577340 + CmoCh15G010070.1 Cmo15g01007 398515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01007 619 CDD PGM1 10 619 - -
Cmo15g01007 619 PANTHER BNAA09G30060D PROTEIN 152 619 - -
Cmo15g01007 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 235 350 IPR016055 GO:0005975|GO:0016868
Cmo15g01007 619 SUPERFAMILY Phosphoglucomutase, C-terminal domain 478 619 IPR036900 GO:0016868|GO:0071704
Cmo15g01007 619 MobiDBLite consensus disorder prediction 1 20 - -
Cmo15g01007 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 4 62 IPR045244 GO:0004614|GO:0005975
Cmo15g01007 619 Gene3D - 350 448 - -
Cmo15g01007 619 PANTHER BNAA09G30060D PROTEIN 4 62 - -
Cmo15g01007 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 258 277 IPR005841 GO:0005975|GO:0016868
Cmo15g01007 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 329 344 IPR005841 GO:0005975|GO:0016868
Cmo15g01007 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 294 307 IPR005841 GO:0005975|GO:0016868
Cmo15g01007 619 PRINTS Phosphoglucomutase/phosphomannomutase family signature 153 167 IPR005841 GO:0005975|GO:0016868
Cmo15g01007 619 ProSitePatterns Phosphoglucomutase and phosphomannomutase phosphoserine signature. 154 163 IPR016066 GO:0000287
Cmo15g01007 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 88 151 IPR045244 GO:0004614|GO:0005975
Cmo15g01007 619 Pfam Phosphoglucomutase/phosphomannomutase, C-terminal domain 510 582 IPR005843 GO:0016868|GO:0071704
Cmo15g01007 619 Gene3D - 5 240 - -
Cmo15g01007 619 PANTHER PHOSPHOHEXOMUTASE FAMILY MEMBER 152 619 IPR045244 GO:0004614|GO:0005975
Cmo15g01007 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 353 476 IPR005846 GO:0005975|GO:0016868
Cmo15g01007 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 236 345 IPR005845 GO:0005975
Cmo15g01007 619 Gene3D - 241 349 - -
Cmo15g01007 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 337 483 IPR016055 GO:0005975|GO:0016868
Cmo15g01007 619 Gene3D - 459 619 - -
Cmo15g01007 619 PANTHER BNAA09G30060D PROTEIN 88 151 - -
Cmo15g01007 619 Pfam Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 91 200 IPR005844 GO:0005975|GO:0016868
Cmo15g01007 619 SUPERFAMILY Phosphoglucomutase, first 3 domains 5 265 IPR016055 GO:0005975|GO:0016868
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01007 K01835 pgm; phosphoglucomutase [EC:5.4.2.2] - csv:101218883 1086.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g02216 Cmo15g01007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01007 Cmo-Chr15:5565856 Cmo15g01460 Cmo-Chr15:9902338 0 dispersed
Cmo15g01007 Cmo-Chr15:5565856 Cmo04g02216 Cmo-Chr4:16520595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g464 . . . . . . Bma14g01897 . . . . . . . . . Cpe01g01839 . . . . . . . . . . . . . . . . Cone6ag0384 Cone9ag0411 . Csa05g02011 . . Blo06g01007 Blo11g00973 . . . . . . . Cmo04g02216 Cmo15g01007 Cma04g02117 Cma15g00965 Car04g02059 Car15g00912 Cpe13g00359 . Bhi12g00924 . . . . . . Cla01g00622 Cam01g0650 Cec01g0643 Cco01g0668 Clacu01g0638 Cmu01g0612 Cre09g1890 Lsi09g00672 . Chy09g00838 Cme09g01370
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005872 2 2 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01007 Cmo_Chr15 FPKM 17.695881 17.590225 21.685743 20.134174 12.496393 11.931923 13.995834 14.062094 14.879821 16.081049