Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01008 ATGGAAATGCTGCATTGTTTTCTTCTCTTTTCATTCCTAGGGATCACCCATGCCCAAAGCTTCCACAATTTCATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTTCATCAAACCGAATCACAACGTACCCACCACCGACGTCCATCAATCTTATCACATCACTCGCTTTCGAAACTCGGCCATTCGAGCCACTTTGAACCAAGCCATGGTGGCCCATCACCACCTTCTCTCTTCCATGGATTTAGCTTCCTTTCACGATGACGACAGAGTAAAATCAGCTTTAATCGACTGTCTGGAACTCTATGAAGATTCAATCACCGAGCTCAATCGCTCGGTGATGAACTCTATGAAGGCCAATTCAATTGGCCACTTGACATTGCTAAGTGCTTCATTAGCGAATCATCAAACATGTCGAGATGGGTTTCGAGATTTTGGATTTTCTTCTCATTATTTGAATAATATCATTTTTCCACATCAAATTTTGAGTAACTTCTCGAAATTGATCAGCAATTCTCTTGCCATCACCAAGGCCGCTGCCGTGACAGCTACTACTTCTTCCACCCCTGGTAGCCAGCGGCTACTAGCTGGGTCGTTTCCCAAGTGGGTTTCTGGTGATGATAGGATGCTCCTTCGGGACACGACCGAGAAGCGCACGGATATGGTGGTGGCCCAAGATGGGAGCGGCAATTTCAGAACGATATCGGAGGCGGTGGCCGCCGCGGCGGAGGTTAGGAAGGGAAGTGAAAGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAGAGAGAATGTTGTGATTAAGAAAACGTTGAAGAATGTTATGATGATTGGAGATGGGATGGGCGAGACGATCGTTACGGCCATGAAAAACGTCAAAGATGGATCAACCACTTTCCGATCAGCCACTTTTGCGGTGGTCGGCGAAGGGTTCATCGCCAAAGACATGACGTTTGAGAACAGGGCAGGAGCAGAGAAGCACCAAGCTGTTGCCCTCCGAACTAACGCCGATCGCTCAATATTCTATCGATGCAGCTTCAAAGGCTACCAAGACACTCTATACGCCCACTCCAACCGCCATTTCTTCCGTGAATGCCACATTTACGGAACCATCGACTTCATTTTCGGCGACGGCGCCTCTGTATTTCAAAATTGCAACATCTTCGTCAGAAAGCCGATGGAAAACCAGAAAAACACGGTGACGGCGCAGGGGAGGTCCGACCCGAATGAAAACACGGGGTTTGTGATACATAATTCCGTTGTCAGAGCGGCACCGGACCTGAAGGCGGTGGAGGGTGTGTACAAAACCTATTTGGGTAGGCCGTGGAAGGCGTATTCGAGGACGGTGGTAATGAGGAGCTTTTTGGATGGGCTAATTGAACCGGCGGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAAGACGGTTTATTATGGGGAGTTTAAGAACAGCGGTGGCGGGGCAAGTACAATGAGGAGGGTGCAGTGGCCGGGGTACCATGTCATGACGACTGCGGCGGAGGCCGAGAGATTTACAGTGGAAAGTTTCCTGGAAGGAGGAGGTTGGATTCCGGGCACCGGAGTGCCATTTGCAAATGGGGCTAAAGTTTTCCCGCCAAACAAACACTCTGGAAGCACTTACAGTGATGTTTTAAGAGATCTTGCGCCACCGCAAGCTAGCAACAATTATTTCTTCAAAATCATGGGAAATTCTTGCTTAAGTAATGACGGTAGGAGCAGATCGGCCGGTAAATTCTTGCATTTTTGA 1776 48.59 MEMLHCFLLFSFLGITHAQSFHNFMSCSQTPYPDLCFHFIKPNHNVPTTDVHQSYHITRFRNSAIRATLNQAMVAHHHLLSSMDLASFHDDDRVKSALIDCLELYEDSITELNRSVMNSMKANSIGHLTLLSASLANHQTCRDGFRDFGFSSHYLNNIIFPHQILSNFSKLISNSLAITKAAAVTATTSSTPGSQRLLAGSFPKWVSGDDRMLLRDTTEKRTDMVVAQDGSGNFRTISEAVAAAAEVRKGSERRFVIYVKGGIYRENVVIKKTLKNVMMIGDGMGETIVTAMKNVKDGSTTFRSATFAVVGEGFIAKDMTFENRAGAEKHQAVALRTNADRSIFYRCSFKGYQDTLYAHSNRHFFRECHIYGTIDFIFGDGASVFQNCNIFVRKPMENQKNTVTAQGRSDPNENTGFVIHNSVVRAAPDLKAVEGVYKTYLGRPWKAYSRTVVMRSFLDGLIEPAGWLPWAGDFGLKTVYYGEFKNSGGGASTMRRVQWPGYHVMTTAAEAERFTVESFLEGGGWIPGTGVPFANGAKVFPPNKHSGSTYSDVLRDLAPPQASNNYFFKIMGNSCLSNDGRSRSAGKFLHF 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5577017 5579857 - CmoCh15G010080.1 Cmo15g01008 398516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01008 591 SUPERFAMILY Pectin lyase-like 222 534 IPR011050 -
Cmo15g01008 591 Gene3D - 217 537 IPR012334 -
Cmo15g01008 591 SMART PMEI_2 16 178 IPR006501 GO:0004857
Cmo15g01008 591 ProSitePatterns Pectinesterase signature 2. 370 379 IPR033131 -
Cmo15g01008 591 CDD PMEI-like_3 26 176 - -
Cmo15g01008 591 SMART complete 259 439 IPR006633 -
Cmo15g01008 591 Pfam Pectinesterase 223 522 IPR000070 GO:0030599|GO:0042545
Cmo15g01008 591 ProSitePatterns Pectinesterase signature 1. 251 270 IPR018040 -
Cmo15g01008 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 180 IPR006501 GO:0004857
Cmo15g01008 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 182 IPR035513 -
Cmo15g01008 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 26 180 IPR035513 -
Cmo15g01008 591 Pfam Plant invertase/pectin methylesterase inhibitor 26 178 IPR006501 GO:0004857
Cmo15g01008 591 PANTHER PECTINESTERASE 21 536 - -
Cmo15g01008 591 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 21 536 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01175 Cmo-Chr6:8988503 Cmo15g01008 Cmo-Chr15:5577017 1.61E-138 dispersed
Cmo15g01008 Cmo-Chr15:5577017 Cmo17g01039 Cmo-Chr17:8822967 2.08E-149 dispersed
Cmo16g00926 Cmo-Chr16:5729887 Cmo15g01008 Cmo-Chr15:5577017 7.89E-141 dispersed
Cmo15g01008 Cmo-Chr15:5577017 Cmo14g02028 Cmo-Chr14:14842482 1.27E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01008 - K01051 csv:101219120 826.239