Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01021 ATGGGGGACGTGAAGGACAAGTTCAAGGGTTTCATGAAAAGGTTCAATAATCCCTTGTCTTCTTCTTCCTCTGCTAGTTTCAAGGGCCAGGGTAGAGTTTTAGGGTCGTCTTCTTCGGGGTCAACTACTTCCTTGCCTACCCGCCCATCGCAAAATCCCATTTCAAAGCCGAAGCCGGTTAATCCATCTTCGGATTCCCCGCTAAATTCTAAGCCCCCGGTTGCAAATTCAATTGCCAGTGCCCAAAACAGGTCAGAGCAGTCGAATAAATCGAACCCAGATCGTAATCCGGCCGACGGATTTGATCCGTTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAATGTGTTTGAATGTCCGATTTGTGGCCAAAATTACGGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCATCGACAGTGCATCCAAAGGACCAGCAGATCTGTCCACGAACGATGCAGAATCTCTGAGTGAACTTGAGTCTTGCGTTGGCACTTTCTTATCAGGGAATCCGTCACAAAGTTCATTGGATATCGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGACAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTGGGAGGAGTGGACTTGTTGGAGTTTGTGGGTTTTAAATTGCGAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTCCAACAGCGGAAGAAATTAACATATTAGGTAAGGTAGTGGATTCAATTGACCGCCCAAAGCTTGATGAACAACAACAGAAACCCAGCACTGCTACTATGGCTACAACTCAGGCTGATGAACTGGTCGAACCAAAGAAAGTAGACAGACAGATTCGGGTATTCTTTGCTGTCCCTGAAAATATTGCAGCCAACATCGAGCTACCGGACTCGTTTTACAACCTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAACAAAAGATTGCTGAATCTCAGCTTTTGGTTCCTAAATCATACAAGGAAAAACAGGCAAAAGCTGCTAGGAGGAAGTATACAAGAACAGTTATCAGAATTCAATTTCCGGATGGCGTGGTACTTCAAGGTGTTTTTTCTCCTCGGGAGCCAACAAGTGCTCTATATGAGTTTGTGAGTACAGCACTGAAGGAACCCAGTTTGGAATTTGAGTTGATACATCCCGTCGGTGTTAAGCGGCGTACGATCGCTCATTTTCCCACGGGAGAGAGAGGTAAAACGCTAGATGATGAGGAGTTAGTCCCTTCAGCTTTGGTCAAGTTTAGACCAATGGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAATGAACTCCTTGAGATCATTGAACCACTCGTAAGCGGCTCAGCTGTGGCTCCTCCTCCACAACTTTAA 1437 45.02 MGDVKDKFKGFMKRFNNPLSSSSSASFKGQGRVLGSSSSGSTTSLPTRPSQNPISKPKPVNPSSDSPLNSKPPVANSIASAQNRSEQSNKSNPDRNPADGFDPFDSFITSGKRSGNGYSLNVFECPICGQNYGSEEEVSVHVDSCVIDSASKGPADLSTNDAESLSELESCVGTFLSGNPSQSSLDIVLKLLRNIVREPDNSKFRKIRLSNPKIKEAIGEAVGGVDLLEFVGFKLREEDGEMWATMEVPTAEEINILGKVVDSIDRPKLDEQQQKPSTATMATTQADELVEPKKVDRQIRVFFAVPENIAANIELPDSFYNLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPREPTSALYEFVSTALKEPSLEFELIHPVGVKRRTIAHFPTGERGKTLDDEELVPSALVKFRPMETDSVVFTGLRNELLEIIEPLVSGSAVAPPPQL 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 5989272 5992292 - CmoCh15G010210.1 Cmo15g01021 398529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01021 478 SUPERFAMILY PUG domain-like 180 244 IPR036339 -
Cmo15g01021 478 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 468 - -
Cmo15g01021 478 SUPERFAMILY Ubiquitin-like 330 442 IPR029071 -
Cmo15g01021 478 Pfam UBX domain 360 438 IPR001012 GO:0005515
Cmo15g01021 478 Gene3D - 353 444 - -
Cmo15g01021 478 MobiDBLite consensus disorder prediction 1 107 - -
Cmo15g01021 478 SMART ubx_3 356 444 IPR001012 GO:0005515
Cmo15g01021 478 CDD UBX_UBXN6 364 443 - -
Cmo15g01021 478 Gene3D - 177 266 - -
Cmo15g01021 478 ProSiteProfiles UBX domain profile. 359 442 IPR001012 GO:0005515
Cmo15g01021 478 MobiDBLite consensus disorder prediction 15 51 - -
Cmo15g01021 478 CDD PUB 181 266 - -
Cmo15g01021 478 SMART PGNneu 183 250 - -
Cmo15g01021 478 Pfam PUB domain 182 247 IPR018997 -
Cmo15g01021 478 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Cmo15g01021 478 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00703 Cmo-Chr5:3606682 Cmo15g01021 Cmo-Chr15:5989272 4.12E-08 dispersed
Cmo15g01021 Cmo-Chr15:5989272 Cmo04g02213 Cmo-Chr4:16490883 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01021 K14011 - csv:101209321 778.089