Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01023 ATGGGTGACGAGGCCGCGAAGGTTGTTGAGTGGAAATTGCAAGCTCTGGCGTTAATAAAAAGTGTAAAGAAACCCGCAAAAGATTGGGCCCGCCTAATATTACTGGAAGAACTTGAAAGAGGTGAAAAAGGAATCGGGGATGGAACTGTCAGTTATGGGATGGATGATGCTGATGATATCTGTATGGCTTCTTGGACGGGAACTATTATTGGGCCGCCTAATACTGTTCATGAAGGGCGCATCCATCAACTCAAGCTATTCTGTGGGCAGGATTACCCTGATAATCCTCCGAACGTTAAATTTCAAACTCCGATTAATATGACCTGTGTCAATTCAGAAACCGGGGTGGTGGAACCAAGCCTTTTCCCCATGCTTGCTAACTGGCAAAGGGAGCATACAATGGAGGACATATTAATGCAATTGAAGAAAGAAATGACTTCTCCCCAGAACAGGAGACTAAGTCAGCCTTCTGAAGGTAATGAGGATGGACGAATAGAGCAAAAGGGGCTAGTGTTGAAATGTTGCATTCTATAA 534 44.38 MGDEAAKVVEWKLQALALIKSVKKPAKDWARLILLEELERGEKGIGDGTVSYGMDDADDICMASWTGTIIGPPNTVHEGRIHQLKLFCGQDYPDNPPNVKFQTPINMTCVNSETGVVEPSLFPMLANWQREHTMEDILMQLKKEMTSPQNRRLSQPSEGNEDGRIEQKGLVLKCCIL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6035550 6041058 - CmoCh15G010230.1 Cmo15g01023 398531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01023 177 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 177 IPR000608 -
Cmo15g01023 177 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 29 162 - -
Cmo15g01023 177 SMART ubc_7 32 176 - -
Cmo15g01023 177 Gene3D Ubiquitin Conjugating Enzyme 16 162 IPR016135 -
Cmo15g01023 177 Pfam Ubiquitin-conjugating enzyme 59 152 IPR000608 -
Cmo15g01023 177 SUPERFAMILY UBC-like 29 159 IPR016135 -
Cmo15g01023 177 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g01096 Cmo15g01023 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00506 Cmo-Chr6:2429541 Cmo15g01023 Cmo-Chr15:6035550 3.33E-71 dispersed
Cmo14g00334 Cmo-Chr14:1536619 Cmo15g01023 Cmo-Chr15:6035550 9.81E-70 dispersed
Cmo15g01023 Cmo-Chr15:6035550 Cmo20g00031 Cmo-Chr20:219376 1.20E-09 dispersed
Cmo15g01023 Cmo-Chr15:6035550 Cmo04g02211 Cmo-Chr4:16474345 6.45E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01023 K10704 - csv:101209154 291.582