Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01025 ATGGCTTGCTTGGTTTCTCGTACCGGAAGGGAGCTGCAAAGATACAATCATATGGGGTTTCGCCAAGTTGTCGGTTGTATACCCTATAGATTCAAATTCAGCGAAGATGGGGTGAAAATTCGTGATGCATATGAGGTGCTTGTGATAAGTTCTCAAAAGGGTCAAGGCCTGATGTTTCCCAAGGTACTTCCAAATAAACAATTTCTTGTTTTCCTCAATTGGGCTCTTGTTCTTAATCAATTTTGTTCCCCATTTCAGGGTGGTTGGGAACTCGATGAATCCTTGGAACAAGCTGCTTGTAGAGAATCACTTGAAGAAGCTGGTGTTGTTGGGAAAGTTGAGTCTGAACTTGGAAAATGGAGATTCATCAGCAAAAGCCAAGGCACATACTATGAAGGCTATATGTTCCCTTTGTTTGTTGAGGAACAACTTGAGCTGTGGCCAGAGAAACATGTTCGACAAAGAATATGGATGGGTGTAGGTGAAGCTAGAGAAGTGTGTAGACATTGGTGGATGAAGGAAGCTTTAGATATCTTAGTTGAAAGACTAACATCCATGGGAGAGCAAAAGAATGGTGATGATCTGTGA 588 42.01 MACLVSRTGRELQRYNHMGFRQVVGCIPYRFKFSEDGVKIRDAYEVLVISSQKGQGLMFPKVLPNKQFLVFLNWALVLNQFCSPFQGGWELDESLEQAACRESLEEAGVVGKVESELGKWRFISKSQGTYYEGYMFPLFVEEQLELWPEKHVRQRIWMGVGEAREVCRHWWMKEALDILVERLTSMGEQKNGDDL 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6046504 6047966 - CmoCh15G010250.1 Cmo15g01025 398533

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01025 195 CDD Nudix_Hydrolase_9 22 173 - -
Cmo15g01025 195 ProSitePatterns Nudix box signature. 87 108 IPR020084 GO:0016787
Cmo15g01025 195 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 5 182 - -
Cmo15g01025 195 ProSiteProfiles Nudix hydrolase domain profile. 19 180 IPR000086 -
Cmo15g01025 195 SUPERFAMILY Nudix 83 185 IPR015797 -
Cmo15g01025 195 PANTHER NUDIX HYDROLASE 17, MITOCHONDRIAL 1 61 - -
Cmo15g01025 195 PANTHER NUDIX HYDROLASE 17, MITOCHONDRIAL 86 191 - -
Cmo15g01025 195 Pfam NUDIX domain 77 166 IPR000086 -
Cmo15g01025 195 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 1 61 - -
Cmo15g01025 195 PANTHER DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 86 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01025 K07766 E3.6.1.52; diphosphoinositol-polyphosphate diphosphatase [EC:3.6.1.52] - csv:101208911 298.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02407 Cmo-Chr4:17915297 Cmo15g01025 Cmo-Chr15:6046504 2.04E-69 dispersed
Cmo15g00759 Cmo-Chr15:3728955 Cmo15g01025 Cmo-Chr15:6046504 8.33E-69 dispersed
Cmo15g01025 Cmo-Chr15:6046504 Cmo13g01210 Cmo-Chr13:9503482 1.44E-45 dispersed
Cmo15g01025 Cmo-Chr15:6046504 Cmo04g02209 Cmo-Chr4:16470047 6.85E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g490 . Blo16g00750 . . . . . . . . . . . . . . Cpe01g01832 . . . . . . . . . . . . . . . . Cone6ag0369 Cone9ag0399 . . . . . . . . . . . Bma06g01128 . . Cmo15g01025 . Cma15g00978 . Car15g00924 Cpe13g00349 . Bhi12g00937 . . . . . . Cla01g00636 Cam01g0663 Cec01g0655 Cco01g0682 Clacu01g0652 Cmu01g0626 Cre09g1878 Lsi09g00685 . . Cme09g01347
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001639 0 2 2 2 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 5 2 3 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01025 Cmo_Chr15 FPKM 11.752979 14.210461 100.663185 98.311935 27.520313 23.971304 24.222675 14.828701 14.090045 14.301356