Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01028 ATGTCTTCTCCTTCCATGGAGGCGCCTGCCCAACAGATCCCTCTCTTACCCTCCCGTCATCCCTCCAACTCTGACGCCTCCACTTCCCCCATCGGCCCCCTCGCTGTTCTCTTCGCTCACGCCACTGGCCGCCGTGGAACTTCTATGGTGGTCCGGGAGACAGCGGCGCGTGAACTTGAAGAGCGCCGCATCGATTGGGGGTATTCCAAGCCGGTGGTGGCTCTTGACATTATGTGGAATTTGGCTTTCGTTTTCGCTTCTCTGGGTGTGCTTATTCACTCGGCCGATGAAAAACCTAACACGCCAATTCGGCTTTGGATTGTCGTTTATGCGGTTCAATGCTTGGTGCACGCTGTGCTTGTGTGGTTTGAATTCAGAAGGAGGAATGCGAGGAGGGCTAGGGATATGGAGACGCAGCATAATGCATATGTAGCTAATGAAAGCGATGAAGAAGATGGTACCCCCTGGAATCTCTCCGGTGTTGCCAAAAGATGTGAGTCAGTGAACACCCTGATATCATTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTGGCTGGGGGTAACATCCTAATGCAGAATGCTCCATCTTTATACTGGTTGGCTGTGGTATTTCTGGCATTTGATGTGTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCTATTCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAAGTATAGATATCAAGTGTCCAATGAGCCTTCTTCTGGGGATGGTTTGATGGTTCCCATCGAATCTAGCAGCAGACACTTAACGACTGAGCGTGTTCTATTACGCGAGGATGCGGAGTGCTGTATATGCCTTAGTCCTTACGAGGACGGAGCCGAGCTTCATGCTCTTCCATGCAATCACCATTTTCATTATGCTTGTATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAATCACGTCGTGATCCTGCTTCGTTCTGGTTCAAACTTGTTAGTCTTTTCTTGTTTCCCCTTCTTCGTGTTCATGCTGCCTGA 1092 48.63 MSSPSMEAPAQQIPLLPSRHPSNSDASTSPIGPLAVLFAHATGRRGTSMVVRETAARELEERRIDWGYSKPVVALDIMWNLAFVFASLGVLIHSADEKPNTPIRLWIVVYAVQCLVHAVLVWFEFRRRNARRARDMETQHNAYVANESDEEDGTPWNLSGVAKRCESVNTLISLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYQVSNEPSSGDGLMVPIESSSRHLTTERVLLREDAECCICLSPYEDGAELHALPCNHHFHYACITKWLKMNATCPLCKSRRDPASFWFKLVSLFLFPLLRVHAA 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6128617 6130641 - CmoCh15G010280.1 Cmo15g01028 398536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01028 363 ProSiteProfiles Zinc finger RING-type profile. 296 337 IPR001841 -
Cmo15g01028 363 PANTHER E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE 11 337 - -
Cmo15g01028 363 SUPERFAMILY RING/U-box 283 340 - -
Cmo15g01028 363 Pfam Ring finger domain 295 337 IPR001841 -
Cmo15g01028 363 SMART ring_2 296 336 IPR001841 -
Cmo15g01028 363 MobiDBLite consensus disorder prediction 1 27 - -
Cmo15g01028 363 PANTHER TARGET OF ERK KINASE MPK-1 11 337 - -
Cmo15g01028 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 344 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00034 Cmo-Chr6:230143 Cmo15g01028 Cmo-Chr15:6128617 1.22E-87 dispersed
Cmo15g01028 Cmo-Chr15:6128617 Cmo16g01058 Cmo-Chr16:7427147 7.64E-90 dispersed
Cmo15g01028 Cmo-Chr15:6128617 Cmo04g02205 Cmo-Chr4:16435498 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01028 - K13148 cmo:103504433 568.155