Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g01051 | ATGGATGCGAGTTCTATAGACGAAAGCAGGGGCAGCGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCCCCAGCGCCTGGGATGCCCCATGAGGCGGAGTCTCGGAAGCTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAATGGCCGATGGGGGGCCCAGATTTACGAGAAGCATCAAAGAGTCTGGCTGGGGACATTCAACCAAGAACACCACGCTGCCAACGCCTACGACATCGCTGCCCTGCGCTTCCGTGGCCGCGACGCCGTCACCAACTTTAAATCCCTGGACGACGAGGATGATAAGGATGCCATGGAGGGCGAGTTTCTGAACTCCCACTCCAAGCTGGAGATCGTGGACATGCTCCGGAAACACACCTACAATGAGGAGCTGGAGCAGAGCAAGCGGCAGCGTGGGGCCATAGCGGCGGCTAATACGGCTGTCCACCATTCGGGGGTTGATTCGAAGAGGGAAGTGTTGTTTGAGAAAACGGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGGTTCAGGGAAAGGAATGCTTCTGAACTTGGAGGATATGGGAGGGAAAGTTTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAAGGGTGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTTCGGTTCCTCCGCTCCACCGGGGCGGATAAGCAGCTTTACATCGATGGAAAGGCGACAAGTGAAGGGGGGGTGAAGGCGGTTCATGTGGTCAAGCTTTTTGGAGTCAATATTCTGGAAGTGCCGCTGCCGGTGGGTCGTTGCGGCGGGGAGCCAAAGAACCAAGGGGTATTATTGGAATTGCAACCTTCCAAGAAGCAGAGAATAATCAAAGCTTTGTAA | 975 | 55.49 | MDASSIDESRGSDSTSISPVTPLLFHSSPAPGMPHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHHAANAYDIAALRFRGRDAVTNFKSLDDEDDKDAMEGEFLNSHSKLEIVDMLRKHTYNEELEQSKRQRGAIAAANTAVHHSGVDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGADKQLYIDGKATSEGGVKAVHVVKLFGVNILEVPLPVGRCGGEPKNQGVLLELQPSKKQRIIKAL | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 6789326 | 6790300 | + | CmoCh15G010510.1 | Cmo15g01051 | 398559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g01051 | 324 | PRINTS | Ethylene responsive element binding protein signature | 47 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | PRINTS | Ethylene responsive element binding protein signature | 83 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | CDD | AP2 | 45 | 100 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | ProSiteProfiles | B3 DNA-binding domain profile. | 168 | 270 | IPR003340 | GO:0003677 | |
Cmo15g01051 | 324 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 33 | 295 | IPR044800 | GO:0003700 | |
Cmo15g01051 | 324 | ProSiteProfiles | AP2/ERF domain profile. | 46 | 101 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo15g01051 | 324 | PANTHER | AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 | 33 | 295 | - | - | |
Cmo15g01051 | 324 | Gene3D | AP2/ERF domain | 45 | 102 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | Pfam | B3 DNA binding domain | 168 | 262 | IPR003340 | GO:0003677 | |
Cmo15g01051 | 324 | SMART | B3_2 | 168 | 270 | IPR003340 | GO:0003677 | |
Cmo15g01051 | 324 | Pfam | AP2 domain | 46 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01051 | 324 | Gene3D | - | 158 | 277 | IPR015300 | - | |
Cmo15g01051 | 324 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cmo15g01051 | 324 | SUPERFAMILY | DNA-binding domain | 45 | 101 | IPR016177 | GO:0003677 | |
Cmo15g01051 | 324 | CDD | B3_DNA | 167 | 254 | IPR003340 | GO:0003677 | |
Cmo15g01051 | 324 | SUPERFAMILY | DNA-binding pseudobarrel domain | 166 | 266 | IPR015300 | - | |
Cmo15g01051 | 324 | SMART | rav1_2 | 46 | 107 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo15g01051 | Cmo18g01060 | CCT | |
Cmo15g01051 | Cmo18g01060 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01591 | Cmo-Chr4:8109511 | Cmo15g01051 | Cmo-Chr15:6789326 | 8.97E-136 | dispersed | |
Cmo15g01051 | Cmo-Chr15:6789326 | Cmo18g01060 | Cmo-Chr18:11230116 | 6.99E-130 | dispersed | |
Cmo15g01051 | Cmo-Chr15:6789326 | Cmo04g02102 | Cmo-Chr4:13302123 | 2.75E-175 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11194 | PF02362 | B3 | 2.10E-27 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g01051 | K09287 | - | csv:101206328 | 484.182 |