Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01051 ATGGATGCGAGTTCTATAGACGAAAGCAGGGGCAGCGACTCCACCTCCATTTCTCCCGTCACTCCATTACTCTTCCACTCATCCCCAGCGCCTGGGATGCCCCATGAGGCGGAGTCTCGGAAGCTTCCATCTTCCCGTTTCAAAGGAGTGGTCCCTCAGCCCAATGGCCGATGGGGGGCCCAGATTTACGAGAAGCATCAAAGAGTCTGGCTGGGGACATTCAACCAAGAACACCACGCTGCCAACGCCTACGACATCGCTGCCCTGCGCTTCCGTGGCCGCGACGCCGTCACCAACTTTAAATCCCTGGACGACGAGGATGATAAGGATGCCATGGAGGGCGAGTTTCTGAACTCCCACTCCAAGCTGGAGATCGTGGACATGCTCCGGAAACACACCTACAATGAGGAGCTGGAGCAGAGCAAGCGGCAGCGTGGGGCCATAGCGGCGGCTAATACGGCTGTCCACCATTCGGGGGTTGATTCGAAGAGGGAAGTGTTGTTTGAGAAAACGGTGACGCCGAGTGACGTGGGGAAGTTGAACCGGCTGGTGATACCGAAGCAGCACGCGGAGAAGAATTTCCCGATGGGGGAGGGGGTGGGTTCAGGGAAAGGAATGCTTCTGAACTTGGAGGATATGGGAGGGAAAGTTTGGCGGTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGTTGACTAAAGGGTGGAGCCGGTTCGTGAAAGAGAAGAGTCTCCGAGCCGGGGATGTGGTTCGGTTCCTCCGCTCCACCGGGGCGGATAAGCAGCTTTACATCGATGGAAAGGCGACAAGTGAAGGGGGGGTGAAGGCGGTTCATGTGGTCAAGCTTTTTGGAGTCAATATTCTGGAAGTGCCGCTGCCGGTGGGTCGTTGCGGCGGGGAGCCAAAGAACCAAGGGGTATTATTGGAATTGCAACCTTCCAAGAAGCAGAGAATAATCAAAGCTTTGTAA 975 55.49 MDASSIDESRGSDSTSISPVTPLLFHSSPAPGMPHEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNQEHHAANAYDIAALRFRGRDAVTNFKSLDDEDDKDAMEGEFLNSHSKLEIVDMLRKHTYNEELEQSKRQRGAIAAANTAVHHSGVDSKREVLFEKTVTPSDVGKLNRLVIPKQHAEKNFPMGEGVGSGKGMLLNLEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLRAGDVVRFLRSTGADKQLYIDGKATSEGGVKAVHVVKLFGVNILEVPLPVGRCGGEPKNQGVLLELQPSKKQRIIKAL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6789326 6790300 + CmoCh15G010510.1 Cmo15g01051 398559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01051 324 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Cmo15g01051 324 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Cmo15g01051 324 CDD AP2 45 100 IPR001471 GO:0003700|GO:0006355
Cmo15g01051 324 ProSiteProfiles B3 DNA-binding domain profile. 168 270 IPR003340 GO:0003677
Cmo15g01051 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 33 295 IPR044800 GO:0003700
Cmo15g01051 324 ProSiteProfiles AP2/ERF domain profile. 46 101 IPR001471 GO:0003700|GO:0006355
Cmo15g01051 324 MobiDBLite consensus disorder prediction 1 23 - -
Cmo15g01051 324 PANTHER AP2/ERF AND B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR TEM1 33 295 - -
Cmo15g01051 324 Gene3D AP2/ERF domain 45 102 IPR036955 GO:0003700|GO:0006355
Cmo15g01051 324 Pfam B3 DNA binding domain 168 262 IPR003340 GO:0003677
Cmo15g01051 324 SMART B3_2 168 270 IPR003340 GO:0003677
Cmo15g01051 324 Pfam AP2 domain 46 93 IPR001471 GO:0003700|GO:0006355
Cmo15g01051 324 Gene3D - 158 277 IPR015300 -
Cmo15g01051 324 MobiDBLite consensus disorder prediction 1 53 - -
Cmo15g01051 324 SUPERFAMILY DNA-binding domain 45 101 IPR016177 GO:0003677
Cmo15g01051 324 CDD B3_DNA 167 254 IPR003340 GO:0003677
Cmo15g01051 324 SUPERFAMILY DNA-binding pseudobarrel domain 166 266 IPR015300 -
Cmo15g01051 324 SMART rav1_2 46 107 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01051 Cmo18g01060 CCT
Cmo15g01051 Cmo18g01060 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01591 Cmo-Chr4:8109511 Cmo15g01051 Cmo-Chr15:6789326 8.97E-136 dispersed
Cmo15g01051 Cmo-Chr15:6789326 Cmo18g01060 Cmo-Chr18:11230116 6.99E-130 dispersed
Cmo15g01051 Cmo-Chr15:6789326 Cmo04g02102 Cmo-Chr4:13302123 2.75E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11194 PF02362 B3 2.10E-27 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01051 K09287 - csv:101206328 484.182