Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01052 ATGGCAATTAGCGCTTCGCTCGTTCGAGTTTCATCATTCAAGCTCTCTTCAGTCTCTCATGGTGATGATTTCTCACCTTCGTCGAAGTCGTCGTCCTTCATGGGCGTGCCACTTAATTTTCTTCCCTCTTTTCGCTCTGGGAAACAAAAGCAGTTTCATGACAATCTTGTCGTTGTATCGAAGAGGACGTCGGGTCTGGAGGAAGCCTTGAGAAATTTGAGAGAGCAAAAGCTTGAAACTGTGAGAAAAGTTAGAAGGATACCACCATTGAGGCGTGGGAAAGTATCTCCACGTCTCCCTGTGCCTGAACACATTCAAAAACCTCCTTATGTTGGTTCTTCTATACTGCCAGAAATTTCAAGTGAGTATCAAATGCATGATTCTGAAGGAATTGCTCAAATGAGGGCTGCATGTCAGCTTGCCGCTCGTGTGTTAGACTATGCTGGAACTCTAGTTAGGCCGTCAGTAACAACAAATGAAATTGACAAAGCAGTGCATCAGATGATTATTGATGCTGGTGCTTATCCATCACCTCTTGGCTACGGGGGATTTCCAAAGAGTGTTTGCACATCAGTTAATGAGTGCATGTGTCACGGAATACCAGACTCTCGTCAATTACAGAATGGTGATATAATAAACATTGATGTGACGGTCTACCTAAATGGATATCATGGAGACACATCGAAGACATATTTTTGTGGAGATGTAAGCGACGGAATGAGGCGTCTAGTGAAGGTTACAGAGGAATGTCTCGAGAGAGGTATTGCTGTATGCAAGGATGGTGCTAGTTTTAAGAAAATTGGGAAGAGAATCAGTGAGCATGCTGAAAAATATGGCTTTGGGGTGGTGGAGCGTTTTGTTGGACATGGTGTGGGATCTGTATTTCACTCTGAACCACTTATATATCACCACCGCAATGAGGAACCTGGACATATGGTCGAAGGTCAAACTTTTACAATTGAACCAATTCTTACGATGGGAGGCATTGACTGCATAACATGGCCAGACAACTGGACCACTTTAACAGTTGATGGTAGTCCAGCTGCTCAGTTTGAGCACACTATTTTGATAACTAGAAGGGGAGCTGAAATTTTGACCATCCCTTGA 1107 43.63 MAISASLVRVSSFKLSSVSHGDDFSPSSKSSSFMGVPLNFLPSFRSGKQKQFHDNLVVVSKRTSGLEEALRNLREQKLETVRKVRRIPPLRRGKVSPRLPVPEHIQKPPYVGSSILPEISSEYQMHDSEGIAQMRAACQLAARVLDYAGTLVRPSVTTNEIDKAVHQMIIDAGAYPSPLGYGGFPKSVCTSVNECMCHGIPDSRQLQNGDIINIDVTVYLNGYHGDTSKTYFCGDVSDGMRRLVKVTEECLERGIAVCKDGASFKKIGKRISEHAEKYGFGVVERFVGHGVGSVFHSEPLIYHHRNEEPGHMVEGQTFTIEPILTMGGIDCITWPDNWTTLTVDGSPAAQFEHTILITRRGAEILTIP 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6791948 6808460 + CmoCh15G010520.1 Cmo15g01052 398560

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01052 368 Hamap Methionine aminopeptidase [map]. 123 368 IPR002467 GO:0006508|GO:0070006
Cmo15g01052 368 PRINTS Methionine aminopeptidase-1 signature 188 201 IPR001714 -
Cmo15g01052 368 PRINTS Methionine aminopeptidase-1 signature 210 226 IPR001714 -
Cmo15g01052 368 PRINTS Methionine aminopeptidase-1 signature 280 292 IPR001714 -
Cmo15g01052 368 PRINTS Methionine aminopeptidase-1 signature 310 322 IPR001714 -
Cmo15g01052 368 PANTHER METHIONINE AMINOPEPTIDASE 23 367 - -
Cmo15g01052 368 TIGRFAM met_pdase_I: methionine aminopeptidase, type I 126 366 IPR002467 GO:0006508|GO:0070006
Cmo15g01052 368 CDD MetAP1 131 366 IPR002467 GO:0006508|GO:0070006
Cmo15g01052 368 ProSitePatterns Methionine aminopeptidase subfamily 1 signature. 286 304 IPR002467 GO:0006508|GO:0070006
Cmo15g01052 368 PANTHER METHIONINE AMINOPEPTIDASE 23 367 - -
Cmo15g01052 368 SUPERFAMILY Creatinase/aminopeptidase 85 367 IPR036005 -
Cmo15g01052 368 Pfam Metallopeptidase family M24 133 358 IPR000994 -
Cmo15g01052 368 Gene3D Creatinase/methionine aminopeptidase superfamily 88 367 IPR036005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01052 K01265 map; methionyl aminopeptidase [EC:3.4.11.18] - csv:101213374 671.389
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01052 Cmo18g01082 CCT
Cmo04g01626 Cmo15g01052 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01052 Cmo-Chr15:6791948 Cmo20g01188 Cmo-Chr20:11727409 3.88E-142 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g217 . Blo16g01036 . Bda11g01113 Bpe13g01312 Bpe10g00948 . . Cmo04g01626 Cmo18g01082 . Cma18g01062 Car04g01604 Car18g00985 . Cpe09g00257 . Bhi07g01396 . . . . . . . . . . . . . Cone13ag0873 . Cone6ag0487 Cone9ag0499 . Csa05g02558 Chy10g01098 Cme10g00313 Blo06g00980 . . Bda11g01113 . . . Bma06g00792 . . Cmo15g01052 . Cma15g00997 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002340 1 1 2 1 1 2 0 2 2 2 2 2 2 2 2 2 2 3 2 2 2 3 3 2 3 2 1 5 1 2 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01052 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0