Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01055 ATGATGGGCGAGGCCGTGATGCTCAGCTCTGAGGATATGGCGGACGCAGAGAGTATGGGCACTCATAAACCCCTCAGAGATGCCACCTCCAGTGGAGGGTTTAAGTGGGACCGATTTCTGCCCAAGATCATGCTTAGGGTCTTGCTCGTCGAAGCCGACGATTCCACCCGACAGATTATCACCGCCCTTCTCCGCAAGTGCTGCTACCGAGTGGCTGCTGTTCCTGATGGCTTAAAAGCTTGGGAGATTCTCAAAGAAAGGCCTCGTAGTGTAGATCTTATATTGGCGGAAATTGAATTGCCATCCATCTCTGGCTTTTCTCTGCTCACTTTGATCATGGAGCACGAGATTTGCAAGAACATTCCTGTTATAATGATGTCATCTGAAGATTCTATCAGCACTGTTTATACATCCATGATGAAAGGTGCAGCAGATTATCTTGTGAAGCCCTTAAGGAGAAATGAGCTGAGGAATCTGTGGCAACATGTTTGGAGAAGACAGGCGTCATCCATTCAAGAAAAGGTTGAAGTCACTTCAGAAAATGAGACTGCAAGCAATCATTCAACTGGGTATAACAAAAACATTGAGAAAGGGAGTGATACTCAGAGCTCTTGTACGAAGGTAGACTTTGAGGCTGGAAGTAAGATGCAGGAAAATTCAGAGTGTAGGCAGGGAAAAGCATCTCCCAAGAATTTCAAGCTACAGAAAGATGAACATCACATAAATTTGAGTCAAAGATTGGTTATGCACGAAGATGAAGCTGGAGGAGGATTGGCACCAATTACACTAAGCATGGGTATCGAGCCAATCAATGATGGGAGAAGTCCTAATATTGGTAGTGAAGCAGGTGAAAACAAGGATTTGCTTGGCAACCCATCCAGAGATGCCACTGCCTTGAATCATGATAACTACCAACAAAGTTCTCCTTCCAACAATTTCGGCTCTGCTCTTCATTTGGATCTTTCCCTGAGAAGATGTCAACCTAATGATTTTGAGGAACGTGTTGCAGAAGGACGGGCTACCCTCAAACATTCTAGTGCTTCAGCTTTTACGAGATACACTTTCAGGCCATTGCAAACATTAGAAGCAAAATCAAGCAGTATCTATGACGAACAAAAGGAATCTGGAAGCAATCCCGAGCATATTGGAAGTATTGCTGCTACTTCTACCTCTGATACAATTAATCCTACGCCAAGATCAAGTACTTCACACACCGTAATCCCTCTTCAAGTTTCAGTCAAAAACTCGGGCTATAGCTCTTTACCTTCCCCCAAGCTCTGCACACAAGGGGGTACCCCATCGTTTCCATGCCCAACTTTAGTCACTCATCCAGAACCCATCTTTGGAAAACAAACGGTTTATACCTTAAACCTTGAGAATCATAATTTGGAGCAATTTCTGAACCAGTATCACAACGTAAGCAGTACAACAAGCAGAAAGATAGAAAACTCAGGGCAGTCTACAGAAAATCAAGGCCATATATCGCCTACCACCGATCACAGTGCAAACGGTAGCCTATATGGTGGTAATACTACTCATGTTAGAAGCATGGGATATCCTAGCAGCTGTGGAAACAACAGCAATGTCGATTGCATCGGCATTGCAACGGTTACATCCGAGAGCAGAAATGAAGAAGCTTTGTTTTCTCAAGGAGGAGGAGATTCTCACCGATTCGGTCAAAGAGAAGCAGCTCTATCGAAGTTCCGACTCAAACGAAAAAATAGATGTTACGAGAAAAAGGTAGTTTTACACGTCTAA 1758 44.03 MMGEAVMLSSEDMADAESMGTHKPLRDATSSGGFKWDRFLPKIMLRVLLVEADDSTRQIITALLRKCCYRVAAVPDGLKAWEILKERPRSVDLILAEIELPSISGFSLLTLIMEHEICKNIPVIMMSSEDSISTVYTSMMKGAADYLVKPLRRNELRNLWQHVWRRQASSIQEKVEVTSENETASNHSTGYNKNIEKGSDTQSSCTKVDFEAGSKMQENSECRQGKASPKNFKLQKDEHHINLSQRLVMHEDEAGGGLAPITLSMGIEPINDGRSPNIGSEAGENKDLLGNPSRDATALNHDNYQQSSPSNNFGSALHLDLSLRRCQPNDFEERVAEGRATLKHSSASAFTRYTFRPLQTLEAKSSSIYDEQKESGSNPEHIGSIAATSTSDTINPTPRSSTSHTVIPLQVSVKNSGYSSLPSPKLCTQGGTPSFPCPTLVTHPEPIFGKQTVYTLNLENHNLEQFLNQYHNVSSTTSRKIENSGQSTENQGHISPTTDHSANGSLYGGNTTHVRSMGYPSSCGNNSNVDCIGIATVTSESRNEEALFSQGGGDSHRFGQREAALSKFRLKRKNRCYEKKVVLHV 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6845235 6850248 - CmoCh15G010550.1 Cmo15g01055 398563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01055 585 Gene3D - 45 228 - -
Cmo15g01055 585 MobiDBLite consensus disorder prediction 270 309 - -
Cmo15g01055 585 SUPERFAMILY CheY-like 44 170 IPR011006 -
Cmo15g01055 585 SMART REC_2 45 160 IPR001789 GO:0000160
Cmo15g01055 585 MobiDBLite consensus disorder prediction 175 204 - -
Cmo15g01055 585 Pfam Response regulator receiver domain 47 158 IPR001789 GO:0000160
Cmo15g01055 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR5 26 583 - -
Cmo15g01055 585 MobiDBLite consensus disorder prediction 1 26 - -
Cmo15g01055 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 583 IPR045279 GO:0009736
Cmo15g01055 585 MobiDBLite consensus disorder prediction 474 509 - -
Cmo15g01055 585 CDD psREC_PRR 47 150 - -
Cmo15g01055 585 ProSiteProfiles Response regulatory domain profile. 46 164 IPR001789 GO:0000160
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01182 Cmo15g01055 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02228 Cmo-Chr14:15799629 Cmo15g01055 Cmo-Chr15:6845235 3.28E-84 dispersed
Cmo15g01055 Cmo-Chr15:6845235 Cmo12g01197 Cmo-Chr12:10782304 1.14E-25 dispersed
Cmo15g01055 Cmo-Chr15:6845235 Cmo02g01182 Cmo-Chr2:7085038 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11195 PF00072 Response_reg 5.40E-20 CL0304 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01055 K12130 - csv:101209788 894.804