Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01056 ATGTCGAGGGTCGACCCGCGCCCACCGCTTCGTCTTCCTCGCCCGAAAGCCTCGACAACCCTAATCACGGGACTTGACTACTGTCACCGGTGGGATCGTCGTCATTCGTCCGTCTCTGGTGGCACTCCCGCGGCGCCTGCGGCTGTGGTATATTATCCTCTATCACGACCTAACCCTAAACCCTTCGTCATCCCCTCCGGTCGCTGCAAAAAGGAGGATCCCGAGGTCTTCTTTCAGCCCTTGCCCACCGCCGTAGTACTGTCGCTATCGCTTATCACCTCCTCGCTGCAGTTTACTTCGTCAGTTTCCCAATCCTTGATGGCAAGCGCTTGGACAAATATGAGCATTGCAATCATACATAGGGATATAGGGAGGGAATGGGAGAATCATTTTGGAGTTATGGGATTGCTCTCTTGGTTTGCTTCATTGTTTTTGGTTCTGCCTTATTTGGAGAGCAAAGTTGTTGATGCAGATGGCAATTGGCTATGGTGGAAGATGTTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCCACAAGTATGGACGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAATGTTAGGGATGCAGAAGATGCAATCCGAGCTCGTGATGGATATAATTTTGATGGTTGCCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGAGGCCCTTCATCCAGTGATCGTCGTAGCAGTTATGGTGGTGGTGGTGGCGGTGGTGGTGGAGGAGGAGGAGGAGGGGGAGGGGGACGTTTTGGTGTTTCAAAACGATCAGAATATCGGGTTATTGTACGTGGACTCCCATCTTCTGCTTCTTGGCAGGATTTGAAGGATCATATGCGCAAGGCTGGTGATGTGTGTTTTGCTGAAGTTTCTCGTGACAGTGAAGGGACATTTGGGGTTGTTGATTATACTAACTATGACGACATGAAATATGCTATTCGAAAACTTGATGATACTGAATTCAGAAATCCTTGGGCTAGAGGATACATTCGGGTGAAGAAGTATGATGGAAGTCCCACTAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAAGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGAAGCAGAAGCAGAAGCAGAAGCCGCAGTAGAAGTCGAGGTCGGGATCGGGATCGTAGCCGAAGTCGAAGTCGGAGCCGAAACCGAAGTCAAAGCCGAAACCAAAGCCGAAGCCGAAGCCGAAGTGCTAGACCAAATAGGAGCAAATCAGCAGAAAGATCTGTTTCTAGATCAGTTTCAAGATCAAGATCTCCATCCCCTGTTAAATCTTAG 1395 48.67 MSRVDPRPPLRLPRPKASTTLITGLDYCHRWDRRHSSVSGGTPAAPAAVVYYPLSRPNPKPFVIPSGRCKKEDPEVFFQPLPTAVVLSLSLITSSLQFTSSVSQSLMASAWTNMSIAIIHRDIGREWENHFGVMGLLSWFASLFLVLPYLESKVVDADGNWLWWKMFVALKMSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGRFGVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGVVDYTNYDDMKYAIRKLDDTEFRNPWARGYIRVKKYDGSPTRSRSRSRSRSKSRSRSRSRSRSRSRSRSRSRSRGRDRDRSRSRSRSRNRSQSRNQSRSRSRSARPNRSKSAERSVSRSVSRSRSPSPVKS 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6850601 6859326 - CmoCh15G010560.1 Cmo15g01056 398564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01056 464 MobiDBLite consensus disorder prediction 378 404 - -
Cmo15g01056 464 MobiDBLite consensus disorder prediction 252 284 - -
Cmo15g01056 464 MobiDBLite consensus disorder prediction 369 464 - -
Cmo15g01056 464 CDD RRM1_SF2_plant_like 179 250 - -
Cmo15g01056 464 MobiDBLite consensus disorder prediction 420 438 - -
Cmo15g01056 464 SUPERFAMILY RNA-binding domain, RBD 177 359 IPR035979 GO:0003676
Cmo15g01056 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 253 IPR000504 GO:0003723
Cmo15g01056 464 Gene3D - 292 370 IPR012677 -
Cmo15g01056 464 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 173 432 - -
Cmo15g01056 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 357 IPR000504 GO:0003723
Cmo15g01056 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 247 IPR000504 GO:0003723
Cmo15g01056 464 MobiDBLite consensus disorder prediction 405 419 - -
Cmo15g01056 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 293 371 IPR000504 GO:0003723
Cmo15g01056 464 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR34A 173 432 - -
Cmo15g01056 464 Gene3D - 171 290 IPR012677 -
Cmo15g01056 464 SMART rrm1_1 179 249 IPR000504 GO:0003723
Cmo15g01056 464 SMART rrm1_1 294 367 IPR000504 GO:0003723
Cmo15g01056 464 CDD RRM2_SF2_plant_like 293 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01056 K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1 - qsu:112022507 334.724
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01181 Cmo15g01056 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01056 Cmo-Chr15:6850601 Cmo11g01189 Cmo-Chr11:6938284 7.04E-88 dispersed
Cmo02g01181 Cmo-Chr2:7082299 Cmo15g01056 Cmo-Chr15:6850601 5.52E-124 transposed
Cmo15g01056 Cmo-Chr15:6850601 Cmo02g01180 Cmo-Chr2:7079412 7.33E-18 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g971 . . Bda05g00142 . . . Bma10g01319 . . . . . Car02g00950 . . Cpe05g00577 . . . . . . . . Cla01g00010 Cam01g0010 Cec01g0009 Cco01g0011 Clacu01g0011 Cmu01g0011 Cre09g2494 Cone1ag1018 . . . . Csa05g00007 Chy09g01474 . Blo07g00317 . . . . . . . . Cmo02g01181 Cmo15g01056 . . . . . Cpe13g00338 Bhi12g00700 . . . . . . . . . . . . . . . . Cme09g02022
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000386 3 9 3 2 2 3 5 3 3 3 2 3 3 3 4 5 3 7 5 3 3 3 4 3 3 2 3 22 7 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01056 Cmo_Chr15 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0