Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01077 ATGGAGATTTTCTACTTCTTGGTGTTTGGAACAATGTCTCTAGTTGTTGCAGCTCTGGAGCTCAGCAAAACCAACAAGGACCGGATCAATACGCCCTCCGCTTTCAATTCCTTCAAGAACAATTACCTTCTCGTTTATTCTCTCATGATGGTTGAGAGTTGTGCGCATTTTGTTGGTGATCTTCTCGCGTTGAGAAGTGGTGGAACTAAGAGAGGACAGAGCGCTGGGGACTGGTTGCAGGGACCATACGTATACTACCTTTACAGTCAGTATGGCTTTGGTAAAGGAGAGATCGGTCAGCTTTTCATTGCTGGTTTTGGGTCCTCCATGTTGTTTGGTACAATTGTTGGTTCTCTTGCTGACAAACAAGGTCGAAGGAGGGCTTGCATTACTTATTGTATTACATACATTCTGAGTTGCATCACCAAGCATTCTCCTCAATACAAGAGGGGCTTTGAACAGCAATGGTTGTCGATTACATTCTCAAAGGCTATATTCCTCGGCAATGGTCTTATTGCAATTCTTGCTGGGTTGTTTGGTAATGTACTTGTTGATAGTCTATCTCTTGGACCAGTGGCACCTTTTGATGCCGCTGCATGCTTTCTTGCAATTGGTATGGCCATTATTATGTCATCTTGGACTGAGAACTATGGAGATATATCAGAGAATAAGGATCTGCTTACCCAATTCAGGGGTGCTGCCGTTGCCATCGCATCTGATGAGAAGATCGCTCTGCTGGGTGCTATTCAATCTCTATTTGAAGGTTCGATGTATACCTTTGTGTTCCTCTGGACACCTGCTCTTAGCCCAAATAATGAGGATATCCCCCATGGCTTTATCTTTGCAACATTTATGTTGGCTTCAATGCTCGGAAGTTCCCTTGCATCTAGGTTGATGGCTCGAAATTCACCAAAAGTTGAGAGCTACATGCAGATTGTTTTCGTTGTCTCTTCTGCCTCTCTTGTACTTCCGATCGTGACCAGTTTCTTGGTAGCTCCATCAGGTGAGAAAGGTGGAAGCATCTCTTTCGCAGGCTGTATACAGCTGCTTGGCTTCTGTGCTTTTGAGGCCTGTGTTGGTATATTTTGGCCTTCCATAATGAAGATGAGATCCCAGTACATTCCTGAGGAGGCTAGAAGCACCATCATGAACTTCTTCCGCATTCCCCTCAACATCTTCGTGTGTGTGGTGCTGTACAATGTGGATGCTTTCCCCATCACTGTGATGTTTGGCATGTGCTCTATTTTCCTCTTTGTGGCATCGATTTTACAGAGGCGGCTTCAGACAATTGCTGAGAAACCAACAGCAGCAGCAGCAGCTTCCTTCTTGAGTAGCTGCTGCTGCTGTAATTGTAGAAACCATGTTGCGTTGCACGATGATATTATTTCTAAAGCTTTTCAGGGAAGACATGGGCGTGCTTTTCTGTTCTCTCATGCTATGAACATCACAGTGGGACCGAAGGAAGATCGGCATCTCATGACGGGTCTCCACACTGTTGCTGATGTGCATTGTGTCGACTGTCGTGAGGTGCTCGGGTGGAAATACGAGAGGGCGTATGAGGCGTCGCAGAAGTATAAAGAAGGGAAGTTCATTCTTGAAAAGTCAAAAATTGTTAGAGACAACTGGTAG 1629 45.18 MEIFYFLVFGTMSLVVAALELSKTNKDRINTPSAFNSFKNNYLLVYSLMMVESCAHFVGDLLALRSGGTKRGQSAGDWLQGPYVYYLYSQYGFGKGEIGQLFIAGFGSSMLFGTIVGSLADKQGRRRACITYCITYILSCITKHSPQYKRGFEQQWLSITFSKAIFLGNGLIAILAGLFGNVLVDSLSLGPVAPFDAAACFLAIGMAIIMSSWTENYGDISENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNNEDIPHGFIFATFMLASMLGSSLASRLMARNSPKVESYMQIVFVVSSASLVLPIVTSFLVAPSGEKGGSISFAGCIQLLGFCAFEACVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLFVASILQRRLQTIAEKPTAAAAASFLSSCCCCNCRNHVALHDDIISKAFQGRHGRAFLFSHAMNITVGPKEDRHLMTGLHTVADVHCVDCREVLGWKYERAYEASQKYKEGKFILEKSKIVRDNW 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 6998924 7006876 + CmoCh15G010770.1 Cmo15g01077 398585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01077 542 ProSiteProfiles Yippee domain profile. 444 541 IPR034751 -
Cmo15g01077 542 PANTHER MOLYBDATE-ANION TRANSPORTER 1 51 - -
Cmo15g01077 542 PANTHER MOLYBDATE-ANION TRANSPORTER 75 149 - -
Cmo15g01077 542 CDD MFS_MFSD5_like 35 425 - -
Cmo15g01077 542 Pfam Sugar-tranasporters, 12 TM 4 51 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cmo15g01077 542 Pfam Sugar-tranasporters, 12 TM 149 352 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cmo15g01077 542 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 148 438 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cmo15g01077 542 Gene3D MFS general substrate transporter like domains 73 427 IPR036259 -
Cmo15g01077 542 SUPERFAMILY MFS general substrate transporter 77 428 IPR036259 -
Cmo15g01077 542 PANTHER MOLYBDATE-ANION TRANSPORTER 148 438 - -
Cmo15g01077 542 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 1 51 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cmo15g01077 542 PANTHER SAM (S-ADENOSYL METHIONINE) TRANSPORTER 75 149 IPR008509 GO:0015098|GO:0015689|GO:0016021
Cmo15g01077 542 Pfam Yippee zinc-binding/DNA-binding /Mis18, centromere assembly 446 537 IPR004910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01077 K24175 MFSD5; MFS transporter, MFS domain-containing protein family, molybdate-anion transporter - csv:101204554 733.406
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01168 Cmo-Chr2:7031186 Cmo15g01077 Cmo-Chr15:6998924 0 dispersed
Cmo15g01077 Cmo-Chr15:6998924 Cmo07g00071 Cmo-Chr7:428389 0 dispersed
Cmo15g01077 Cmo-Chr15:6998924 Cmo02g01166 Cmo-Chr2:7028733 5.46E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00034 Chy09g01450 . . . . . . Bpe12g00342 . . . . Cmo15g01077 . . . . . . Bhi12g00675 . . . Hepe06g0812 . . . . . . . . . . . . Cme09g01999
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001828 3 2 3 2 2 2 3 2 2 2 2 2 2 2 2 2 2 3 3 2 2 2 2 2 2 2 2 3 3 2 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01077 Cmo_Chr15 FPKM 1.285846 2.0259 2.944945 2.887957 13.732013 12.78801 11.882195 2.066219 1.951556 1.837684