Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01081 ATGGGTAGCTTTAGTGATGATGAAGAATGCCCATATTTTGATGCTCAAGAGATCAATGCTCCTTCGATATCTGAATTCAATTGCGATGGTATTGAGGCGGCCATTGATACTCATCTCAGATTCAAAAACTGGGTTGATGGCAGTTTGGTTTATGATGTATGGAACCAAAGCCCCAAGAGTGTTCATGAGCGTCGGAGGAAGTTTTTGAAATGGATGGAGTTGGGATTAGATCAAACTCTTCCTTGTAATGGGAATTCTCTGACTCTGTGGAGTGATTGGAGAGAAGGGGATGGAGGAAGATTGAGGGATAATTCTTGTGCTGAATCCTCTGATTTTGAAGATGTGTTTTGGTCGGGTCGATCTTCGATGTCGTGTTGGTCTAGTGATGATTTTGAACGTTCGGAGATAACTTCAACGAATACCATTATGTATATGGATGATGGGATTAATGGAGAATCTAGCACGAAAAATGGGGATCGAAACAACTCTGTTCGGTTTGCTATGGCTGAAGAGCTTGAGCTTGAGGAGACTTCGAGTTCCTCACCATCTTTCCAACAAATGATGAGGATGGAGGCTGAGAGAGCAAACATTCCGTTGCGTACAGAACAACGAGTCAACAAACGTTGGCTTAAGAAATTGCGATCGGCAGCCTGCATTTTTGATAAGTCAACAGGATTGGTGGTTGATGATGATGATGATGATGATGATTCAGCTGCAGGGTCGAGAGTTCGGAGGGTGAAGGTTCGACAGTGCAAGAAGCAATTGAAGGAGCTATCAGCCCTTTATATGGGACAAGATATGAAGGCACATGAAGGTGCTATCTTGACAATGAAGTTTAGTCCTAATGGACAGTATCTTGCTACCGGTGGTGACGACGGGATTGTTAAATTGTGGCAAGTGATTGAAGACGAGAGATCTAACGAATCTGACATCCCCGAAATCGATCCATCTTGCATTTACTTCACGGTGAATCGTCTCTCGGAGTTGAGACCTTTGCTTGTGGAGAAAGAGAAGATGGCTAACGCAATGGTGTTGAGGAAAACATCGGAATCAGCTTGTATAATATTTCCACCGAAAGTCTTCAGGATCTTGGAGAGACCGTTGCACGAGTTCCATGGACATACCGGTGGGATTTTGGATCTCTCTTGGTCAAAAACCAATTATCTTCTGTCATCATCAGTCGATAAAACCGTTCGACTTTGGCGATTGGGATCCGATGATTGTCTCAGAGTTTTTTCACATAGTAATTACGTTACTTGTGTTCATTTCAATCCCATGGATGAAAATTACTTTATCAGTGGTTCAATAGATGGAAAGATCCGTATTTGGGGAATTCCTTGTAGTCAAGTTGTTGATTGGATTGACATTAGGGAAATTGTCACTGCAGTGTCTTATCATCCTGATGGACAGGGAGGAATTGTTGGCTCCATAAACGGTACTTGCCGGTTCTTTAAAGTAATAGGTGATAATAACCTCGAGTTAGACGCCACATTATGTTTGTCCAGTAAGAAGAAGTCGCCCAGTAAAAAGATAACAGGGTTTCAGTATTCTGCAGAAGATTCAAGCAGAATAATGGTGAGCTCTGCCGATTCTCGAATCCGAATTATTGAAGGGCTAAATGTGATCCAGAAGTACAAGGGGCCTTGTAATACCGGAAACCAGATGTCTGCGTCGTTTACCTCGGATGGGAAACATATTATCTCAGCTAGTGGGGATTCTAATGTATATGTATGGAACTGCAATTATAAGAACGAGTCTGTTATTTCCCCGGTGAAAAAGATTAAGTCGTATGAATATTTCTCCGCCAATGGAACCATTGCAGTACCGTGGTGTGGTTCGAGATGTAACACGGAGGAAAGACGTTTTTCTGGCATGCGGAGGAGTTCTACTGAAACTTTCCCGCTTCCATCACCCGCGTTTTTCTCTTTAAGCCAAGAGTTATTAGAATCCTTCCCTAAGGGATCTGCAACATGGCCCGAGGAAAAGCTCCCAACTTCGAGCCTACCAACGAAACCATCTATGATGCACAAATCTCGGTATAAATTTCTGAAGTTGTCTTGCCAAAATACATCGAGTTCTCATGCATGGGGTCTGGTCATCGTGACTGCAGGATCGGATGGACGAATCAGCTGCAATGAACTGATAGCTGATACGTTATCGTTGTTGGGATTCGTCGAGCATCTCTATGTATTTTCTGATACTCTAGATCGTCTCTTAGAGAAAACGACATCGAATCAGCTCGTGACCAAGGTTAGCTTACCTGGATTGTCCTCTTGTCAATCATTCTCTAGACAGTTTAATCATAGACTTGGTTACTGCGGGGGCTTGGAGGACCTCTTATCCTCCTTACCTCTTGCCTTTTGTGCTCTAACATGGTCAAGGAAATCAAGATTGGTGGTCTGA 2403 43.15 MGSFSDDEECPYFDAQEINAPSISEFNCDGIEAAIDTHLRFKNWVDGSLVYDVWNQSPKSVHERRRKFLKWMELGLDQTLPCNGNSLTLWSDWREGDGGRLRDNSCAESSDFEDVFWSGRSSMSCWSSDDFERSEITSTNTIMYMDDGINGESSTKNGDRNNSVRFAMAEELELEETSSSSPSFQQMMRMEAERANIPLRTEQRVNKRWLKKLRSAACIFDKSTGLVVDDDDDDDDSAAGSRVRRVKVRQCKKQLKELSALYMGQDMKAHEGAILTMKFSPNGQYLATGGDDGIVKLWQVIEDERSNESDIPEIDPSCIYFTVNRLSELRPLLVEKEKMANAMVLRKTSESACIIFPPKVFRILERPLHEFHGHTGGILDLSWSKTNYLLSSSVDKTVRLWRLGSDDCLRVFSHSNYVTCVHFNPMDENYFISGSIDGKIRIWGIPCSQVVDWIDIREIVTAVSYHPDGQGGIVGSINGTCRFFKVIGDNNLELDATLCLSSKKKSPSKKITGFQYSAEDSSRIMVSSADSRIRIIEGLNVIQKYKGPCNTGNQMSASFTSDGKHIISASGDSNVYVWNCNYKNESVISPVKKIKSYEYFSANGTIAVPWCGSRCNTEERRFSGMRRSSTETFPLPSPAFFSLSQELLESFPKGSATWPEEKLPTSSLPTKPSMMHKSRYKFLKLSCQNTSSSHAWGLVIVTAGSDGRISCNELIADTLSLLGFVEHLYVFSDTLDRLLEKTTSNQLVTKVSLPGLSSCQSFSRQFNHRLGYCGGLEDLLSSLPLAFCALTWSRKSRLVV 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7163643 7169427 + CmoCh15G010810.1 Cmo15g01081 398589

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01081 800 SUPERFAMILY WD40 repeat-like 266 709 IPR036322 GO:0005515
Cmo15g01081 800 Gene3D - 250 607 IPR015943 GO:0005515
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 300 - -
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 443 - -
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 411 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 497 537 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 260 299 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 446 485 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 364 402 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 405 444 IPR001680 GO:0005515
Cmo15g01081 800 SMART WD40_4 538 579 IPR001680 GO:0005515
Cmo15g01081 800 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Cmo15g01081 800 PRINTS G protein beta WD-40 repeat signature 389 403 IPR020472 -
Cmo15g01081 800 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 579 IPR001680 GO:0005515
Cmo15g01081 800 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 710 - -
Cmo15g01081 800 Pfam WD domain, G-beta repeat 268 298 IPR001680 GO:0005515
Cmo15g01081 800 Pfam WD domain, G-beta repeat 366 401 IPR001680 GO:0005515
Cmo15g01081 800 Pfam WD domain, G-beta repeat 407 443 IPR001680 GO:0005515
Cmo15g01081 800 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 403 - -
Cmo15g01081 800 PANTHER WD REPEAT DOMAIN 44 6 710 IPR040324 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01081 - - - csv:101206156 1177.93
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01161 Cmo15g01081 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01072 Cmo-Chr3:8019754 Cmo15g01081 Cmo-Chr15:7163643 1.57E-126 dispersed
Cmo07g00814 Cmo-Chr7:3770048 Cmo15g01081 Cmo-Chr15:7163643 1.99E-124 dispersed
Cmo15g01081 Cmo-Chr15:7163643 Cmo15g01372 Cmo-Chr15:9347593 0 dispersed
Cmo15g01081 Cmo-Chr15:7163643 Cmo02g01161 Cmo-Chr2:7000290 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01081 Cmo_Chr15 FPKM 0.047461 0.0 0.0 0.0 0.294347 0.217786 0.297892 0.0 0.0 0.0