Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01083 ATGGCAGACTGGCAAGACCTTCTCCAAACCGTCTTCATAGGCCTCATCTTCTCTTATCTTGTTGCTAAGTTGATCTCCATAGTCGTCTCTTTCAAGGAAGATAACCTATCTATTTCTCGTACCACTACTACTTCCTTTCCGAAATCCAGCGAAGGAGCTTCCACAACCAACCCAATCGAAATCGACCCGGCTGACGTCGGGTCGGGTTCGGGAGATTTCGGATTGGCGCATGAGGATGACTCTGTGATCGCCGAGCATGGTAGTGTTAGGAATGAGAGTTTTGGTGGGAGTGATACTGATGATGATTGGGAAGGGGTGGAGAGCACCGAATTGGACGAGCTGTTTAGCGCTGCCACTGCATTTGTTGCCGCCTCTGCTGCTGACCGCCTTTCACCGAAGGTTTCCAATGAAGTACAGTTGCAGCTCTATGGCTACTACAAAATTGCTACCGAGGGGCCTTGCAGCACGCCGCAGCCGTCTGCCTTGAAAATGACAGCTCGGGCCAAGTGGCAAGCGTGGCAGAAATTGGGTGCTATGCCTCCTGAAGAAGCAATGCAAAAGTACATTGATCTCGTTACTGAGTTGTATCCATCTTGGGTGGCTGGTGCAAGTGGGAAAAGCAAAGATGGAAATGCTGATGCTAAAAGTAAAGATTCAAGAGGACCTATGGGGCCAGTCTTCAGCACTTTTGTATACGAGGAAACCGGGAATGATTTGTCTGGGAGTGATGTTGGAGTTTACTTGTGGAGGTTTGGAGTTGGAATTGCTAGGTTGAAGCCTAGGAAAAGATCAGATTTTCTCTTGGCTGTAAAGGATCTTATTATATTCTTTGGAGGATGTTGCTTTGGAAGTTTTGCTATTGGCTATTTTTCTCTTTCACCTGCCACTGAATCTTCTAATAGGTTCCTTAGTGGAAACTATTATTCATCTTTTGAGATAAAGGCCTGGAAGTGTGCGAAAACTGCTGGAACTATCTGGGAGCTGGAAGCCATTCATGCCTTTGCTAGAGAAGGAGAATTGGAAAATTTGCTGAAGAGTGTAGAAAGTGGCGTTTCAGTGAATATCAAGGATAGTGAAGGCCGGACCCCATTGCATTGGGCAGTGGATCGTGGGCATTCTAATGTTGTGGAGCTGCTTGTTAGCAGGAATGCGGATATCAATGAAAAGGACATTGATGGCCAAACTCCATTGCATTATGCCGTTGTATGCGACAGAAAATCGATTGCTGAATATCTTGTGAAGAACAATGCCAACATTAACGAAAAAGATAATGATGGAAAGTCACCTTGTGATCTTTGCGAATCTATCTGGCCTTTCATGGTCTCTGCGGGGAAGTAG 1338 46.04 MADWQDLLQTVFIGLIFSYLVAKLISIVVSFKEDNLSISRTTTTSFPKSSEGASTTNPIEIDPADVGSGSGDFGLAHEDDSVIAEHGSVRNESFGGSDTDDDWEGVESTELDELFSAATAFVAASAADRLSPKVSNEVQLQLYGYYKIATEGPCSTPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDLVTELYPSWVAGASGKSKDGNADAKSKDSRGPMGPVFSTFVYEETGNDLSGSDVGVYLWRFGVGIARLKPRKRSDFLLAVKDLIIFFGGCCFGSFAIGYFSLSPATESSNRFLSGNYYSSFEIKAWKCAKTAGTIWELEAIHAFAREGELENLLKSVESGVSVNIKDSEGRTPLHWAVDRGHSNVVELLVSRNADINEKDIDGQTPLHYAVVCDRKSIAEYLVKNNANINEKDNDGKSPCDLCESIWPFMVSAGK 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7180695 7189154 + CmoCh15G010830.1 Cmo15g01083 398591

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01083 445 Pfam Acyl CoA binding protein 112 192 IPR000582 GO:0000062
Cmo15g01083 445 Gene3D - 105 217 IPR014352 -
Cmo15g01083 445 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 111 201 IPR000582 GO:0000062
Cmo15g01083 445 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Cmo15g01083 445 SUPERFAMILY Ankyrin repeat 329 433 IPR036770 -
Cmo15g01083 445 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Cmo15g01083 445 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Cmo15g01083 445 PRINTS Ankyrin repeat signature 360 375 IPR002110 GO:0005515
Cmo15g01083 445 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 327 443 - -
Cmo15g01083 445 Gene3D - 325 396 IPR036770 -
Cmo15g01083 445 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 1 237 - -
Cmo15g01083 445 ProSiteProfiles Ankyrin repeat profile. 359 391 IPR002110 GO:0005515
Cmo15g01083 445 MobiDBLite consensus disorder prediction 41 64 - -
Cmo15g01083 445 PRINTS Acyl-coA-binding protein signature 157 172 IPR000582 GO:0000062
Cmo15g01083 445 PRINTS Acyl-coA-binding protein signature 178 195 IPR000582 GO:0000062
Cmo15g01083 445 PRINTS Acyl-coA-binding protein signature 134 152 IPR000582 GO:0000062
Cmo15g01083 445 Gene3D - 397 435 IPR036770 -
Cmo15g01083 445 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 2 327 443 - -
Cmo15g01083 445 Pfam Ankyrin repeats (many copies) 351 400 IPR002110 GO:0005515
Cmo15g01083 445 SUPERFAMILY Acyl-CoA binding protein 110 200 IPR035984 GO:0000062
Cmo15g01083 445 SMART ANK_2a 392 421 IPR002110 GO:0005515
Cmo15g01083 445 SMART ANK_2a 359 388 IPR002110 GO:0005515
Cmo15g01083 445 MobiDBLite consensus disorder prediction 41 57 - -
Cmo15g01083 445 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 1 237 - -
Cmo15g01083 445 ProSiteProfiles Ankyrin repeat region circular profile. 359 390 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01083 - - - cmax:111471513 462.996
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00604 Cmo-Chr6:2976171 Cmo15g01083 Cmo-Chr15:7180695 5.66E-10 dispersed
Cmo07g00674 Cmo-Chr7:3046376 Cmo15g01083 Cmo-Chr15:7180695 1.54E-22 dispersed
Cmo15g01083 Cmo-Chr15:7180695 Cmo03g00966 Cmo-Chr3:7246667 1.23E-16 dispersed
Cmo16g01265 Cmo-Chr16:9015366 Cmo15g01083 Cmo-Chr15:7180695 5.56E-11 dispersed
Cmo02g01155 Cmo-Chr2:6987103 Cmo15g01083 Cmo-Chr15:7180695 4.57E-28 transposed
Cmo15g00331 Cmo-Chr15:1537622 Cmo15g01083 Cmo-Chr15:7180695 2.72E-11 transposed
Cmo15g01083 Cmo-Chr15:7180695 Cmo02g01154 Cmo-Chr2:6984789 2.11E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1016 . Blo15g00082 . . . Bpe07g01021 . . . . . Cma15g01020 . . . . . . . . . . . . Cla01g00034 Cam01g0031 Cec01g0030 Cco01g0032 Clacu01g0034 Cmu01g0032 Cre09g2475 Cone1ag0998 Cone5ag0702 . . . Csa05g00039 Chy09g01445 . . . Bda06g00791 . . . . . . . Cmo15g01083 . . . . . Cpe13g00319 Bhi12g00659 . . . . . . . . . . . . . Lsi09g00015 . . Cme09g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011205 1 2 1 0 1 1 1 1 1 1 0 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 2 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01083 Cmo_Chr15 FPKM 25.587042 28.673603 18.420033 17.041645 34.307049 35.469334 37.181557 19.690638 18.888945 17.946566