Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01087 ATGCCGTTCATTGAGGTTAACACCACCGCCCCAGCCGCGGAGGACGCCAAGATCAACACACCCATCAGAATTTTCTACAGAATTTACGGACGCGGATTAACCAAGGTCCTTCTTATCACAGGCTTGGCCGGAACCCACGATTCATGGGGACCCCAAATCAAAGGGTTTATAGGGACCGATGTGCCCAACGAAGACGGCGATAGGGACGTCGTCGGTGACCGAGATGCCACTGGTCTCGGCGAGGGAGTTACCTTCGAGAATGGCGGTGGGATCGAGGTTTGTGCATTTGATAATCGGGGAATGGGTCGGAGCTCCGTCCCCACAAAAAAATCTGCATATACAACAAAGATAATGGCGAAGGATGCCATTGCCTTATTGGATCATTTGGGGTGGGAAAAAGCTCATATTCTTGGTCATTCCATGGGAGGTATGATAGCTTGCAAATTAGCGGCTATGGCGCCAGGAAGAGTCAAGTCATTGGCCATGCTCAATGTAACTGGTGGAGGTTTTCAATGTTGCCCTAAGCTTGACCCGCAAACATTCAAAATTGCAGTGAGATTCTTAAAAGCCAAGACTCCTGAACGAAGGGCTAGTGTTGATTTGGATATCCACTATTCGAAGGAGTATCTTGAGGAGTATGTTGGATTTGAAAAAAGAAGAGCAGTATTATATCAGGAATATGTTAAAGGTATATCAGCAACAGGAATGCAGTCTAATGCTGGTTTTGCTGGTCAAGTTAATGCATGTTGGACGCATAAAGTGACAAGAAAAGAGATAGAATGCCTCAAGTCTGCTGGATTTCTTGTATCAGTCATTCATGGCAGGCACGATGTTATTGCTCAGATGTACTATGCTAGAAGACTTGCCGAAAAGCTGTATCCGGTTGCTAGAATGGTAGACCTCCACGGAGGTCATCTAGTCAGTCGCGAGAAAACCGAAGAGGTAAATCGAGCTCTTCTCGACTTAATCAGAGCCTCGGAAATGAAGACGAGTCCACACGAGTGGACAAACTTGGCAAAGAAAAGATCATGGTGGATGGAGGAGAGAATGGCTTTTGTAACACTGAAGAATGAAGGAGGAGGAGGAGGAAGCAGTATCTCCTCCTCCTCCTCCGCCTCCGCCAAACCTTTCTTCTTAGAGAGACTCCATCTTTTCGTGTTGTATCTCTTTGGTCTGATTCTTTTCGCGTTCGAGTATCTCTGGAACGGCCTGAAAAGCTTGAAACCGCTGGCTATTCGGATACCGACATCGCCGACCCAAGATTCTACGCAGTATATGCAAGTCGATCAGAGCGACAGTTCGTGTGTCGTGAGGAATGATACGCAAAATGGGGGCTTCGCTCATGCGGAATACATCTTCAATTTTTCCAAGAAACTTCAAGAGGATCTACAGACGTTCGGAATGAAAATAAAGCAACACGAGGACAACATTAAATTTCTCAAGACTCAGAAAAGCAAATTAGATGAATCCATCCTCGATTTGCAAGGCAAGTATAATCATTCTTCAGGCACGCCTGTGGCTGAAAACGAGATTCATTCCCATCCTCAAAGTGATGAGGAAACGATGCAACAGATTATGCAGCAGGAGAAGTCTGCTGCTGGAATTATTTGTAAATTGAGCGCACATCATAGTATTCAGGCTTACAATATCATGTTGACCAAAGACGTATTGGGCATTGTTGCTCGGCTTGGAAAAGTTGATGATGATAATCTTAGCAGACTTCTCTCTGAGTACTTGGGAATGGAAACCATGCTGGCAATTGTCTGTAGAACTTACGAGGGAGTTAAGGCATTAGAAATATATGACAAGGAAGGTTGCATAAACAAAAGTTTTGGCATTCATGGTCTTGGTGCTTCAATTGGGAGGAACTTGGATGGCCGACCATATGTTGGCGATTTTATTGCTAATGACCCACAAAGGAGGCTTGACCTTATAAAGCCAAGATTACCTAATGGGGAGTGTCCACCTGGCTTTCTTGGCTTTGCTGTTAATATGATTGATATTGATAGCATGCACATATTTTGTCTCGCAGCCAATGGATATGGTCTCAGGGAGACCCTGTTCTATTCTCTCTTTTCTCGTCTTCAAGTATATAAAACCAGAGCAGACATGCTACAAGCTCTCCCTTGCATTAGTGATGGTGCACTTTCTTTAGATGGAGGGATAATTAAGGCTACTGGTGTTTTTTGCTTGGGCAACCAGGAAGATGTTCAGTTGAGATTCCCAAAGGCCTCAATGAAATCAAGCCTTCCTGAAAACTACATTGAATCTGCGAGGCAGATTAAAGAGCTCAAGTGGAAAAAGGAAAAGATGATTGAAGATATAAAGAGAGAACATGCGTTGTTGGACAATTCTAAGCTCAATTTTGACAGGAAAAAGGCAGAGTTTCTGAAGTTCCTGGCTGAAAGCTCATCATACGCAGCTCAGGTGAGATCTAAAATCCTTTGA 2448 44.4 MPFIEVNTTAPAAEDAKINTPIRIFYRIYGRGLTKVLLITGLAGTHDSWGPQIKGFIGTDVPNEDGDRDVVGDRDATGLGEGVTFENGGGIEVCAFDNRGMGRSSVPTKKSAYTTKIMAKDAIALLDHLGWEKAHILGHSMGGMIACKLAAMAPGRVKSLAMLNVTGGGFQCCPKLDPQTFKIAVRFLKAKTPERRASVDLDIHYSKEYLEEYVGFEKRRAVLYQEYVKGISATGMQSNAGFAGQVNACWTHKVTRKEIECLKSAGFLVSVIHGRHDVIAQMYYARRLAEKLYPVARMVDLHGGHLVSREKTEEVNRALLDLIRASEMKTSPHEWTNLAKKRSWWMEERMAFVTLKNEGGGGGSSISSSSSASAKPFFLERLHLFVLYLFGLILFAFEYLWNGLKSLKPLAIRIPTSPTQDSTQYMQVDQSDSSCVVRNDTQNGGFAHAEYIFNFSKKLQEDLQTFGMKIKQHEDNIKFLKTQKSKLDESILDLQGKYNHSSGTPVAENEIHSHPQSDEETMQQIMQQEKSAAGIICKLSAHHSIQAYNIMLTKDVLGIVARLGKVDDDNLSRLLSEYLGMETMLAIVCRTYEGVKALEIYDKEGCINKSFGIHGLGASIGRNLDGRPYVGDFIANDPQRRLDLIKPRLPNGECPPGFLGFAVNMIDIDSMHIFCLAANGYGLRETLFYSLFSRLQVYKTRADMLQALPCISDGALSLDGGIIKATGVFCLGNQEDVQLRFPKASMKSSLPENYIESARQIKELKWKKEKMIEDIKREHALLDNSKLNFDRKKAEFLKFLAESSSYAAQVRSKIL 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7203733 7215027 + CmoCh15G010870.1 Cmo15g01087 398595

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01087 815 Pfam alpha/beta hydrolase fold 78 165 IPR000073 -
Cmo15g01087 815 PRINTS Epoxide hydrolase signature 300 322 IPR000639 GO:0003824
Cmo15g01087 815 PRINTS Epoxide hydrolase signature 150 163 IPR000639 GO:0003824
Cmo15g01087 815 PRINTS Epoxide hydrolase signature 90 105 IPR000639 GO:0003824
Cmo15g01087 815 PRINTS Epoxide hydrolase signature 136 149 IPR000639 GO:0003824
Cmo15g01087 815 Gene3D alpha/beta hydrolase 18 325 IPR029058 -
Cmo15g01087 815 SUPERFAMILY alpha/beta-Hydrolases 22 321 IPR029058 -
Cmo15g01087 815 PANTHER EN/SPM-LIKE TRANSPOSON-RELATED 444 810 - -
Cmo15g01087 815 PANTHER PROTEIN DEFECTIVE IN MERISTEM SILENCING 3 444 810 - -
Cmo15g01087 815 Coils Coil 456 490 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01087 - - - csv:101202858 695.656
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01150 Cmo15g01087 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01087 Cmo-Chr15:7203733 Cmo14g00936 Cmo-Chr14:4970011 8.32E-11 dispersed
Cmo02g01150 Cmo-Chr2:6959249 Cmo15g01087 Cmo-Chr15:7203733 0 transposed
Cmo15g01087 Cmo-Chr15:7203733 Cmo16g00053 Cmo-Chr16:215447 7.92E-157 wgd
Cmo15g01087 Cmo-Chr15:7203733 Cmo02g01147 Cmo-Chr2:6944672 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1029 . Blo15g00085 . . . Bpe07g01018 . . . . Cma02g01122 Cma15g01024 Car02g00931 Car15g00957 . Cpe05g00597 . . . . . . . . Cla01g00038 Cam01g0037 Cec01g0036 Cco01g0038 Clacu01g0039 Cmu01g0037 Cre09g2470 Cone1ag0993 . Cone14ag0005 Cone15ag0008 . Csa05g00046 Chy09g01442 . . . Bda06g00788 . . . . Bma12g01206 . Cmo02g01150 Cmo15g01087 . . . . . Cpe13g00318 Bhi12g00645 . . Lac11g0162 . . Lcy12g0138 . . . . . . . Lsi09g00018 . . Cme09g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002285 1 4 2 1 1 2 3 2 2 1 1 1 1 2 2 3 2 2 3 1 2 2 1 2 2 1 2 6 6 2 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01087 Cmo_Chr15 FPKM 7.109074 8.136487 9.35867 9.145367 13.090922 13.886452 14.981306 8.394483 7.883773 8.540518