Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01089 ATGCTTCATGTCATGCCTTCATCCCCAAACAGCCCTCCAGCTATTCCCTCTCGACATAGACCTCCGACCAACCCTTTCTCCCCTTCCCTTTATTTAAACTCACTCCCATTCTTCATCTTCTCACTATCATTATTATTACATCCCTCAACCATGAACAACAACTACAATATGCTCCACTCCTCCCACTCCGGCGACACTCCGGCCTCCAGCTTTCGTGTTTCCAATGATCACTCCGATCCCCTACCGCCACCTTCACCATCCTCCTCCCGCCGCCGTATCCTTCTCATCTCCTTCTTCTCCATCCTTCTCATCACTGCCTCCGCCGTCTCGGCTGTCGTTCTCGTCCACTCTCGCATCGCCGCCTCCACGGAGTCGCATTTCCCCCACAACAAGCCCACCCAAGCCATCTCCCGGGCTTGCAGCCTCACTCTCTACCCTTCTCTTTGCCTCTCCTCCCTTCTCTCTGCCCCCGGTTCTCTCTCTGCCGACGTCCACGACCTCGTCCATATCTCTCTCAACCTAACTCTCCAGCATCTCACCAAAGCTCTCTATTCCACTTCACAAATCCCCATCTCCCAAATCTCCAACGACCCTCTTGCCCAATCCGCTTATGAAGACTGTATGGAGCTTCTAAACGACGCCGTTGAAGCTTTTTCCCTCTCTCTCTTCTCCACAACCGCCACCAACCACGACGTGATGACGTGGCTGAGTGCAGCGTTGACTTACCATGACACGTGTACGGATGGATTTTCTGATGTGGCTGACCCAATCAAGGATCAGATAACGGCCAAATTGAGTGATTTGTCGGAGATGATAAGTAACTCTTTAGCCATTTTTTCTGGGTTTGGTGGTGACGATTTGCCGGTGGAGAACCGCCGCCGCCGCCGGCTAATGGAAAGTGATGAACAGTGGTTAGCCGAGGAGAATAATGGTGATGGGGATTTTCCCCGGTGGGTGAGTGGGAAAGATCGCCGCCTTTTGGCTGCTCCCATATCGTCAATTCAGGCGGATATCGTGGTGGCTAAGGATGGTAGTGGCAAATTCAAGACAGTGGCGGAGGCCATTGCGGCGGCTCCTTCATCCAGTGGCCGCCGGATCGTGATCTACATTAAAGCCGGAAAGTACGAAGAGGAGAATTTGAAGGTAGGAAGGAAGAAAACAAACTTGATGTTTGTGGGAGATGGGAAGGGCATAACCGTCATTTCAGGTGGTAAAAGCGTTTATGACAAAGTTACCACTTTCCGGACCGCCACCTTTGCGGGCTCTGGGACAGGACTAATTCTACGAGACATGACATTTGAGAACACGGCAGGGCCAAACAAGCACCAAGCAGTGGCACTACGTTTGAGTGCAGACCACGCTGTGGTATTTCGTTCCAACGTTATCGGTTATCAAGATACTCTCTATGTCCACTCAAATCGTCAGTTCTTTCGAGAGTGCGATATTTACGGCACGATTGACTTCATCTTTGGTAATGCTGTCGTCGTCTTCCAAAGTTGCAACATCTATGCTCGTAAGCCAATGTCAGGACAAAAGAATACCATCACAGCTCAAGACCGAAAAGATCCAAACCAAAACACTGGAATCTCTATCCACGCTTGTAAAATCATCGCCACTGGTGACCTCCAAGCCTCCAAGGGATCTTTCCCCACCTACCTCGGCCGCCCTTGGAAGTTATATTCTAGAGTCGTCTACATGGTATCTTCTATGGGAGACCATATTCATCCTCGCGGTTGGCTCGAATGGCAAGGCTCTTTTGCTCTTGACACTCTTTACTACGGTGAATATATGAATTCTGGGCCGGGTGCCGCTGTAGGGCAGAGGGTTAAATGGCCAGGTTATCGAGTAATAACTTCTGCTATAGAAGCCACCAAATTTACTGTCGGACAGTTTATTTATGGCTCCTCCTGGTTGCCTTCTACTGGAGTGTCGTTTTCAGCTGGATTATCTACTAACTAA 1959 50.18 MLHVMPSSPNSPPAIPSRHRPPTNPFSPSLYLNSLPFFIFSLSLLLHPSTMNNNYNMLHSSHSGDTPASSFRVSNDHSDPLPPPSPSSSRRRILLISFFSILLITASAVSAVVLVHSRIAASTESHFPHNKPTQAISRACSLTLYPSLCLSSLLSAPGSLSADVHDLVHISLNLTLQHLTKALYSTSQIPISQISNDPLAQSAYEDCMELLNDAVEAFSLSLFSTTATNHDVMTWLSAALTYHDTCTDGFSDVADPIKDQITAKLSDLSEMISNSLAIFSGFGGDDLPVENRRRRRLMESDEQWLAEENNGDGDFPRWVSGKDRRLLAAPISSIQADIVVAKDGSGKFKTVAEAIAAAPSSSGRRIVIYIKAGKYEEENLKVGRKKTNLMFVGDGKGITVISGGKSVYDKVTTFRTATFAGSGTGLILRDMTFENTAGPNKHQAVALRLSADHAVVFRSNVIGYQDTLYVHSNRQFFRECDIYGTIDFIFGNAVVVFQSCNIYARKPMSGQKNTITAQDRKDPNQNTGISIHACKIIATGDLQASKGSFPTYLGRPWKLYSRVVYMVSSMGDHIHPRGWLEWQGSFALDTLYYGEYMNSGPGAAVGQRVKWPGYRVITSAIEATKFTVGQFIYGSSWLPSTGVSFSAGLSTN 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7241794 7245354 - CmoCh15G010890.1 Cmo15g01089 398597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01089 652 CDD PMEI-like_3 139 284 - -
Cmo15g01089 652 PANTHER PECTINESTERASE 90 649 - -
Cmo15g01089 652 SMART PMEI_2 131 278 IPR006501 GO:0004857
Cmo15g01089 652 MobiDBLite consensus disorder prediction 66 88 - -
Cmo15g01089 652 PANTHER PECTINESTERASE 90 649 - -
Cmo15g01089 652 SUPERFAMILY Pectin lyase-like 334 648 IPR011050 -
Cmo15g01089 652 ProSitePatterns Pectinesterase signature 2. 482 491 IPR033131 -
Cmo15g01089 652 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 134 280 IPR035513 -
Cmo15g01089 652 Pfam Plant invertase/pectin methylesterase inhibitor 135 278 IPR006501 GO:0004857
Cmo15g01089 652 Gene3D - 331 649 IPR012334 -
Cmo15g01089 652 Pfam Pectinesterase 337 634 IPR000070 GO:0030599|GO:0042545
Cmo15g01089 652 MobiDBLite consensus disorder prediction 1 21 - -
Cmo15g01089 652 Gene3D Invertase/pectin methylesterase inhibitor family protein 133 282 IPR035513 -
Cmo15g01089 652 TIGRFAM PME_inhib: pectinesterase inhibitor domain 113 280 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01089 Cmo18g01346 CCT
Cmo15g01089 Cmo16g00058 CCT
Cmo02g01145 Cmo15g01089 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01089 Cmo-Chr15:7241794 Cmo17g01039 Cmo-Chr17:8822967 1.63E-168 dispersed
Cmo15g01089 Cmo-Chr15:7241794 Cmo16g00058 Cmo-Chr16:242264 0 wgd
Cmo15g01089 Cmo-Chr15:7241794 Cmo18g01346 Cmo-Chr18:12739181 0 wgd
Cmo15g01089 Cmo-Chr15:7241794 Cmo02g01145 Cmo-Chr2:6934865 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01089 - - csv:101216816 971.459