Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01095 ATGAATGGTAACAGCACTCGGAATGGGAATGTAGGAGGATTCAGTAACGCGGAATGGGAGCTTATTCGGAGGTACCACAGGACTGAGCCTGCGGAGAATCAGTGCACCTCTCAGCTTGTCAAGCGTATTAAAGCTCCTGTTCATCTTGTATGGTCTCTGGTAAGGAGGTTTGATCAACCACAAAGATACAAACCTTTTGTTAGCAGATGTGTTTTGAAGGGAAACCTTGAGATCGGGACTCTCAGAGAAGTTGATGTGAAATCGGGGCTTCCAGCCACAACGAGTACAGAGAGATTGGAACTCCTCGATGATGATAGGCACATCCTTAGCATGAGGATTGTTGGCGGAGATCACAGACTCAAGAATTACTCTTCAATCATCTCCTTGCATCCAGAAATCATTGATGGAAGACCAGGGACTTTGGTAATTGAATCATTTGTGGTCGATGTGCCTGAAGGAAACACAAAGGACGAGACATGCTACTTTGTGGAAGCCTTGATTAAATGCAATCTCAAGTCACTTGCTGATGTTTCAGAGCGGCTTGCAGTGCAAGATCGCACTGAGCCTCTTGATAGGATCTAA 582 45.53 MNGNSTRNGNVGGFSNAEWELIRRYHRTEPAENQCTSQLVKRIKAPVHLVWSLVRRFDQPQRYKPFVSRCVLKGNLEIGTLREVDVKSGLPATTSTERLELLDDDRHILSMRIVGGDHRLKNYSSIISLHPEIIDGRPGTLVIESFVVDVPEGNTKDETCYFVEALIKCNLKSLADVSERLAVQDRTEPLDRI 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7330579 7333751 + CmoCh15G010950.1 Cmo15g01095 398603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01095 193 Pfam Polyketide cyclase / dehydrase and lipid transport 38 179 IPR019587 -
Cmo15g01095 193 PANTHER ABSCISIC ACID RECEPTOR PYL3-LIKE 14 190 - -
Cmo15g01095 193 CDD PYR_PYL_RCAR_like 35 179 - -
Cmo15g01095 193 SUPERFAMILY Bet v1-like 35 177 - -
Cmo15g01095 193 Gene3D - 4 188 IPR023393 -
Cmo15g01095 193 PANTHER - 14 190 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01095 K14496 PYL; abscisic acid receptor PYR/PYL family - csv:101221554 371.703
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01046 Cmo15g01095 CCT
Cmo06g01046 Cmo15g01095 ECH
Cmo02g01134 Cmo15g01095 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00128 Cmo-Chr8:666019 Cmo15g01095 Cmo-Chr15:7330579 3.47E-86 dispersed
Cmo15g01095 Cmo-Chr15:7330579 Cmo17g00547 Cmo-Chr17:5542404 2.49E-95 dispersed
Cmo14g02166 Cmo-Chr14:15546239 Cmo15g01095 Cmo-Chr15:7330579 5.95E-102 wgd
Cmo15g01095 Cmo-Chr15:7330579 Cmo16g00072 Cmo-Chr16:330817 2.10E-107 wgd
Cmo15g01095 Cmo-Chr15:7330579 Cmo18g01332 Cmo-Chr18:12646969 4.43E-112 wgd
Cmo15g01095 Cmo-Chr15:7330579 Cmo02g01134 Cmo-Chr2:6871587 7.64E-127 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g124 . . . . . . . . Cmo06g01046 . . . . . . . Cpe05g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01134 Cmo15g01095 . . Car06g00862 . . . . . . . . . . . . . . . . . . . . .
Vvi16g878 . . . . . . . . . . Cma02g01106 Cma15g01033 Car02g00916 Car15g00965 . . . . . . . . . . Cla01g00054 Cam01g0052 Cec01g0052 Cco01g0054 Clacu01g0054 Cmu01g0052 Cre09g2455 Cone1ag0961 Cone5ag0647 . . . . Chy09g01427 Cme06g01103 . . . . . . . . . Cmo02g01134 Cmo15g01095 . . . . . Cpe13g00309 . . . . . . . . . . . . . . Lsi09g00033 Csa03g02200 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000330 3 6 1 3 1 4 8 4 4 4 3 4 8 4 5 7 4 10 8 4 4 4 3 4 4 3 3 8 6 3 137
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01095 Cmo_Chr15 FPKM 89.3871 116.998993 94.325089 90.381668 127.059349 119.309608 132.862045 117.909752 110.647324 116.352158