Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01101 ATGAACTCGTTGGCGGAGAGGATGGTGAAATCGGAGCGAGGGCATGATTCTTGGATTGGCTCGGAGGAGGAAGCTCAGAGAATTGAGATTCACGGGTGTGATTCTTCGATGTTGGCTGTGGAGAGTGATGGGGTGCGACTTTCTGCTTCTGCGTCTCAGCTTTCGAGTCATACTGCTTCTGATGGAAAATTAGGGTTTGGAGAACGCGCTTTCTCTGCTGCTGGAGCTGCCTTTCTTTCGGCAGTAATTGTAAATCCTCTTGATGTTGCAAAGACAAGGTTGCAAGCTCAAGCTGCAGGTGTTCCTTATTCGCATCCACTTAGTGACTTGACCAGTCGCATGGCATTTTTTGGACCAAACACGTTGTTTGCAGATTTAAGGTGTTCTCCTTCATGTGCACGTGCGGGGATTCATGGAACAGTTTCATTATGTCCTCCTGATTGTTTTCAGTACAAAGGGACGTTGGACGTCTTTTACAAAATTATTCGACAGGAAGGATTTGTGAGGTTGTGGAGAGGCACAAATGCTGGCCTAGCTCTTGCTGTTCCCACGGTGGGAATCTACTTACCTTGCTATGACCTATTCCGTAATTGGTTAGAAGAGATCACTTCCCAAAATCTTCATAGTGCTTCTCCTTATGTTCCTTTAGTTGCTGGGGCCTTGGCGCGTTCTTTGGCTTGTGCAACTTGTTATCCAATAGAGCTTGCTAGAACTCGCATGCAGGCATTGAAGGAGATGCAAATTGGCAAGAAGCCGCCTGGAGTCTGGCAGACTTTACTAGGTGTCGTCTCCAATGTTAAGAGCACAAATGGTGAAGCCGCCTCTGCAAAAAGTTACCGTGCCCTATGGACTGGAATGGGGGCGCAGCTTGCACGTGATGTTCCATTCTCAGCAATTTGTTGGTCAACCCTTGAACCAGTCAGAAAGAAACTCATTGGATTGGTAGGTGACGACGCTAATGCAGCCAGTGTGTTTGGGGCCAACTTTTCTGCCGGTTTTGCTGCTGGAAGTCTTGCTGCTGCCACTACATGCCCCCTGGATGTTGCAAAAACCCGACGACAGATAGAGAAGGATCCGGTAAGGGCACTGAGTATGACAACAAGGCAGACACTGATGGAGGTTTGGAGGGATGGTGGGCTGAAAGGACTATTTGCAGGAGTTGGACCGCGCGTTGGCCGTGCAGGCCCATCAGTTGGGATTGTGGTATCATTTTACGAAGTTGTGAAATATGTTCTTCATCACAAATATCCAACCTCAGCTTCATGA 1266 48.18 MNSLAERMVKSERGHDSWIGSEEEAQRIEIHGCDSSMLAVESDGVRLSASASQLSSHTASDGKLGFGERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVPYSHPLSDLTSRMAFFGPNTLFADLRCSPSCARAGIHGTVSLCPPDCFQYKGTLDVFYKIIRQEGFVRLWRGTNAGLALAVPTVGIYLPCYDLFRNWLEEITSQNLHSASPYVPLVAGALARSLACATCYPIELARTRMQALKEMQIGKKPPGVWQTLLGVVSNVKSTNGEAASAKSYRALWTGMGAQLARDVPFSAICWSTLEPVRKKLIGLVGDDANAASVFGANFSAGFAAGSLAAATTCPLDVAKTRRQIEKDPVRALSMTTRQTLMEVWRDGGLKGLFAGVGPRVGRAGPSVGIVVSFYEVVKYVLHHKYPTSAS 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7382873 7387301 - CmoCh15G011010.1 Cmo15g01101 398609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01101 421 Gene3D Mitochondrial carrier domain 39 144 IPR023395 -
Cmo15g01101 421 Gene3D Mitochondrial carrier domain 145 419 IPR023395 -
Cmo15g01101 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 310 IPR018108 -
Cmo15g01101 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 323 411 IPR018108 -
Cmo15g01101 421 ProSiteProfiles Solute carrier (Solcar) repeat profile. 64 198 IPR018108 -
Cmo15g01101 421 Pfam Mitochondrial carrier protein 64 200 IPR018108 -
Cmo15g01101 421 Pfam Mitochondrial carrier protein 325 414 IPR018108 -
Cmo15g01101 421 Pfam Mitochondrial carrier protein 211 311 IPR018108 -
Cmo15g01101 421 SUPERFAMILY Mitochondrial carrier 65 407 IPR023395 -
Cmo15g01101 421 PANTHER BNACNNG35730D PROTEIN 39 419 - -
Cmo15g01101 421 PANTHER FI19922P1-RELATED 39 419 IPR045315 GO:1990542
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01101 K15119 SLC25A39_40; solute carrier family 25, member 39/40 - csv:101220455 676.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01101 Cmo-Chr15:7382873 Cmo02g01486 Cmo-Chr2:8702845 5.95E-19 dispersed
Cmo14g02143 Cmo-Chr14:15439146 Cmo15g01101 Cmo-Chr15:7382873 1.19E-170 transposed
Cmo15g01101 Cmo-Chr15:7382873 Cmo02g01126 Cmo-Chr2:6830891 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g853 . . . . . . . . . . . Cma15g01041 . Car15g00971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00370 . . . . Cmo15g01101 . . . . . . Bhi12g00610 . . . . . . . . . . . . . Lsi09g00041 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003249 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 11 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01101 Cmo_Chr15 FPKM 2.063058 1.889246 2.019469 1.961523 2.639907 2.212707 3.233642 2.115469 2.179221 2.112815