Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01113 ATGTCAACTGCAACAAACCCTTGTTGCCACTCTATCTTCTTCCGCCATGCTCCTCCCAATTCTAGGTTTTCGATTAGGGTTCATTTGAAGCCTCTGCTTCCTCGTTTTCCTCTCAATTCAAGCACCCATTGCGTCAGTACTCTCTCCCGACGCCGCAGAAATAAATGGGAGATTGTGTGCTTCCGGCGTGAAGAGTCGTCGCAGGAACATTTCGAGTCCAAGTCTGTGGAAGATAAATTGGCAGAAGAACTGGTGCCAACTCCTGAAATCAATCAACCGAGTGACCCGAGTAAAGAATGGGCGTCGAGTTTATACAAGGCCCTTGAATCAATATTTGTTACAAAGCCTTGGGTGGTTCCATGGACAGCGAAAACCATCGTTCAGGTTATGCTTCTCTGGGTTGCATCATTTTGGGTAATAGGGTCATGGATAATTCCTATAATAGCCCATACAGCAGGATACAGAAAGGAATTCATGACGTACAGAGGGCAAGCCTTGTACAGCCTTCTTACAGACGTGGTCGAAGGACTTACCGGGATGGCGATTCTGCATCGTTGCCTCTCAAGATTCCATCCCCTTCCACAAGGCTGGTTCAATTTCCGCTTTGAAGGGAAGTGGCAATTCGACGTTGGCTTAGGCTGCCTTATGTTTCCACTCGTAAATCGTCTTTCACAGGTGAATCTAAACTTGTTGCCCGTTCTTCCCTCAGCTCCAGTTACCGTCTCAAGCGTCGAGCAATCAATCATTGCTAGGGACCCAGTGGCAATGGCACTCTACGCAGTGGTCGTGTCTGTCTGTGCCCCCATTTGGGAGGAGATCGTGTTCCGAGGGTTCCTTCTACCATCGTTGACGAAATATATGCCGGTATGGTGCTCTATTTTGGTGAGTTCAGTAGCCTTTGCTCTGGTACATTTCAATATGCAGAGGATGCTACCTCTGATACTGCTTGGGGTGGTGATGGGTAGCGTGTATGCAAGGACTAGGAACCTTCTACCATCAATGTTGTTGCATAGCCTTTGGAATGCGTTTGTATTCTTAGATCTTATGAAGTAA 1053 47.39 MSTATNPCCHSIFFRHAPPNSRFSIRVHLKPLLPRFPLNSSTHCVSTLSRRRRNKWEIVCFRREESSQEHFESKSVEDKLAEELVPTPEINQPSDPSKEWASSLYKALESIFVTKPWVVPWTAKTIVQVMLLWVASFWVIGSWIIPIIAHTAGYRKEFMTYRGQALYSLLTDVVEGLTGMAILHRCLSRFHPLPQGWFNFRFEGKWQFDVGLGCLMFPLVNRLSQVNLNLLPVLPSAPVTVSSVEQSIIARDPVAMALYAVVVSVCAPIWEEIVFRGFLLPSLTKYMPVWCSILVSSVAFALVHFNMQRMLPLILLGVVMGSVYARTRNLLPSMLLHSLWNAFVFLDLMK 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7707420 7711805 + CmoCh15G011130.1 Cmo15g01113 398621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01113 350 PANTHER CAAX AMINO TERMINAL PROTEASE 46 348 - -
Cmo15g01113 350 Pfam Type II CAAX prenyl endopeptidase Rce1-like 257 342 IPR003675 GO:0004222|GO:0016020|GO:0071586
Cmo15g01113 350 PANTHER - 46 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01113 K07052 K07052; CAAX protease family protein - csv:101217840 662.144
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01113 Cmo15g01113 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01732 Cmo-Chr4:8775923 Cmo15g01113 Cmo-Chr15:7707420 7.93E-19 dispersed
Cmo15g01113 Cmo-Chr15:7707420 Cmo19g01018 Cmo-Chr19:8964950 1.82E-13 dispersed
Cmo15g01113 Cmo-Chr15:7707420 Cmo02g01113 Cmo-Chr2:6722890 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g65 . Blo03g00231 Bda06g00126 . . Bpe07g00089 . . . . . . . . . . Cpe05g00630 . . . . . . . . . . . . . . . Cone12ag0274 . Cone9ag0820 . . . . . . . . . . . . . Cmo02g01113 Cmo15g01113 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005068 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 2 1 1 4 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01113 Cmo_Chr15 FPKM 7.709596 6.671609 7.915925 7.710627 2.216791 3.032794 2.244475 8.873608 11.528977 11.337922