Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01117 ATGTCGGTATCAGAAACGAGTTCCATAATTTTGTATCTGAGAGATGTTGAGAGACTTCTTCTTCAGTCACCAAGGATGTACAATCTGTTCCATAAATTTCTGAACAAGCTCTCGGGATCTATTTTAGTACTCGGTTCCCGATTAGTCGATGTCGAAAATGATTGTGGAGATGTTGACAACAGATTGACGAGTTTATTCCGATATAGTGTTGAAATTCGACCCCCTGAAGATGAGAACCATCTTGTCAGCTGGAAAGCTCAATTGGCAGAAGACATGAAGATGATTCAGTTCCAAGATAATAAAAACCACATTGCTGAAGTACTTGCTGCAAATGATCTTGAATGTGATGATCTTGGTTCAATCTGCCATACAGATACCATGGTTCTCAGTAATTATATCGAAGAAATCGTCGTGTCAGCGATATCCTATCATTTGATGAATAACCGGGATCCCGAATACCGAAACGGAAAACTTTTGATATCTTCCAAGAGTTTATCCCATGGATTGAGTATATTCCAGGAAGGAAATAATGAAGGAAAAGACACTCTAAAGCTAGAGACGAACGCAGAATCATCTAAGGTAGCCCAAAGGGACGAGGCGATTGGGGCAAAGACGGAATCGAAATCTGAAAACCCAGCTGCAGAAAACAGAAATGAGGCAGATAAATCTGTTCCTATAGTGAAAAAAGATGTTGAAAATGTACCTCCACAAAAAGCACCTGAAATTCCTCCCGACAACGAATTCGAAAAGCGTATAAGACCCGAGGTTATCCCTGCAAATGAAATTGGGGTGACATTTGAAGACATTGGTTCTATGAATGAAATCAAAGAGTCCTTACAGGAACTAGTTATGCTTCCTCTTCGTCGACCAGACCTCTTTAAAGGAGGGCTTCTTAAACCGTGTCGGGGCATTCTACTTTTCGGCCCTCCTGGAACGGGTAAAACAATGCTAGCAAAGGCCATTGCTAATGAAGCTGGAGCAAGTTTCATCAATGTTTCAATGTCCACAATCACTTCTAAATGGTTTGGGGAAGATGAAAAGAACGTCCGAGCATTGTTCACGCTCGCAGCAAAAGTCTCACCCACGATTATTTTTGTCGATGAAGTTGATAGCATGCTCGGCCAACGGACTAGAGTGGGAGAGCACGAGGCCATGCGGAAGATTAAGAATGAATTCATGTCACACTGGGACGGACTCCTGACTAGGAATGATGAGCGAATACTAGTTCTTGCTGCAACCAACAGGCCATTTGACCTCGATGAAGCAATCATTAGGCGATTCGAGCGCAGAATTATGGTTGGTCTTCCGTCCGTGGAGAGCAGGGAAATGATCATGAGAACTCTTCTATCAAAGGAGAAGGCTGAAGATCTTGATTTCAAGGAGCTTGCAACTATGACAGAAGGATACAGTGGAAGTGATCTCAAGAATTTGTGCGTGACCGCAGCTTATCGGCCTGTTCGGGAGCTCTTGCAACAAGAGAGATTGAAGGATTTGGAAAAGAAGCAGAGAGAGATGAAGGAGAAGGAGGAGAAGGAGAAGGAGACGAAAAATGAGATCGAGAAGGAGAAGGAGACGGAAAATGAGATCGAGATCGAGAAGGAGAAGGAGAAGGAGGAGACAAAAAATGAGATCGAGATCGAGATCGAGAAGGAGACCAAAAATGATTTGGAAAACACTACAGTTACGAAAGAGGCAGGAAAAGAGGAACAAGTCATCATTCTGAGGCCTTTAAATATGGATGATATGAGGCAGGCCAAAAATCAGGTTGCTGCAAGTTTTGCTTCTGAGGGATCAGTTATGAATGAGTTGAAGCAATGGAATGATTTGTATGGAGAGGGAGGTTCAAGAAAAAAGCAACAGCTTACATACTTCCTATAG 1878 42.71 MSVSETSSIILYLRDVERLLLQSPRMYNLFHKFLNKLSGSILVLGSRLVDVENDCGDVDNRLTSLFRYSVEIRPPEDENHLVSWKAQLAEDMKMIQFQDNKNHIAEVLAANDLECDDLGSICHTDTMVLSNYIEEIVVSAISYHLMNNRDPEYRNGKLLISSKSLSHGLSIFQEGNNEGKDTLKLETNAESSKVAQRDEAIGAKTESKSENPAAENRNEADKSVPIVKKDVENVPPQKAPEIPPDNEFEKRIRPEVIPANEIGVTFEDIGSMNEIKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLLTRNDERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVESREMIMRTLLSKEKAEDLDFKELATMTEGYSGSDLKNLCVTAAYRPVRELLQQERLKDLEKKQREMKEKEEKEKETKNEIEKEKETENEIEIEKEKEKEETKNEIEIEIEKETKNDLENTTVTKEAGKEEQVIILRPLNMDDMRQAKNQVAASFASEGSVMNELKQWNDLYGEGGSRKKQQLTYFL 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7769078 7776490 + CmoCh15G011170.1 Cmo15g01117 398625

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01117 625 Pfam AAA+ lid domain 456 499 IPR041569 -
Cmo15g01117 625 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 625 - -
Cmo15g01117 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 514 IPR027417 -
Cmo15g01117 625 Pfam ATPase family associated with various cellular activities (AAA) 304 434 IPR003959 GO:0005524|GO:0016887
Cmo15g01117 625 CDD AAA 302 435 - -
Cmo15g01117 625 Gene3D - 263 524 IPR027417 -
Cmo15g01117 625 MobiDBLite consensus disorder prediction 187 228 - -
Cmo15g01117 625 ProSitePatterns AAA-protein family signature. 407 426 IPR003960 GO:0005524|GO:0016887
Cmo15g01117 625 Coils Coil 488 554 - -
Cmo15g01117 625 MobiDBLite consensus disorder prediction 187 245 - -
Cmo15g01117 625 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 2 625 - -
Cmo15g01117 625 Gene3D - 436 520 - -
Cmo15g01117 625 SMART AAA_5 300 437 IPR003593 -
Cmo15g01117 625 MobiDBLite consensus disorder prediction 504 538 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01117 - - - csv:101216426 1037.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00759 Cmo-Chr4:3789816 Cmo15g01117 Cmo-Chr15:7769078 2.91E-12 dispersed
Cmo15g01117 Cmo-Chr15:7769078 Cmo16g00624 Cmo-Chr16:3064166 0 dispersed
Cmo15g01117 Cmo-Chr15:7769078 Cmo02g01109 Cmo-Chr2:6698916 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01117 Cmo_Chr15 FPKM 1.12364 2.176525 1.193409 1.196372 17.161457 16.340063 16.932808 0.644526 0.888407 0.815295