Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01124 ATGGCGGCCGGAAACAATGACTGGGATCTCTCCGCCGTCGTCCGGAGCTGCAATTCAGCAGCTTACAGGACAACCCCAACTGCCACCGCCGCCACAGAAACCGACTTGTCGTGTCTCGCTTCTTTAACATTCGACGTCGATCCAAACGACGTCGCATTCTCCTTTCCCGACATACTTCAACCCCAACAACAACAACAACACGACGGCTTCGATGAATTACACCAAGCTATCTGTTTCCTTCCCAACTCCCTCACCGCCGCCGTCACCATCGCGCCGGAATTTCCCACCGCCACCACAAACCGTTACTTTCAAGAGGAAATTACACCCATTCTGCCGCAGCCGGATCCTGTGGAGGCGGCAGAGACGGCGGCGGCACTGCAGAATCAACACCACCACCAAATCCAGCCTTCGTTCCCGCCGGAATTCCCAAATTCGCCAATGGTGCAATCTAACATACCCAAATCGAGAAAAAGAAAAAATCAACAGAAGAGAACTGTATGCCATGTTACTGCAGATAATCTCTCAACAGACATGTGGGCTTGGCGTAAATATGGGCAAAAGCCCATTAAAGGATCTCCATATCCAAGAAACTATTACCGTTGCAGCAGCTCAAAAGGGTGTGGGGCCAGAAAGCAAGTTGAACGGAGCAACGCCGATCCCGATTCTTTCATCATCACTTACACCGGCGAACACATTCATCCACGTCCGACTCACCGGAATTGCCTCGCCGGAAGTTTTCGGAACAGGCCACTCTCCTCCGTCACCAACAAAAACCCCACTGGAGATCCCAATCCATCTCTGATCACCACTGCTCTGGTGGGCTCTGGTTCTTCACCGGCTGATTCTCCGATGACGCCGTTCAACGATGACTATGGCGGAGGAGACGAGAAAGAGGGAGAGATGTTTGAGGATATGGCGATCGATAGCGATGACGATTACGACGATATTCTGATTCCAAACTTGATGGTGAGAGATGAAATCTTTGCTGGGTTTGATGAGATTCGGAGGCGGCGACCACCATAA 1023 51.61 MAAGNNDWDLSAVVRSCNSAAYRTTPTATAATETDLSCLASLTFDVDPNDVAFSFPDILQPQQQQQHDGFDELHQAICFLPNSLTAAVTIAPEFPTATTNRYFQEEITPILPQPDPVEAAETAAALQNQHHHQIQPSFPPEFPNSPMVQSNIPKSRKRKNQQKRTVCHVTADNLSTDMWAWRKYGQKPIKGSPYPRNYYRCSSSKGCGARKQVERSNADPDSFIITYTGEHIHPRPTHRNCLAGSFRNRPLSSVTNKNPTGDPNPSLITTALVGSGSSPADSPMTPFNDDYGGGDEKEGEMFEDMAIDSDDDYDDILIPNLMVRDEIFAGFDEIRRRRPP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 7806671 7807927 - CmoCh15G011240.1 Cmo15g01124 398632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01124 340 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 6 334 - -
Cmo15g01124 340 ProSiteProfiles WRKY domain profile. 170 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g01124 340 SMART WRKY_cls 175 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g01124 340 SUPERFAMILY WRKY DNA-binding domain 170 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g01124 340 MobiDBLite consensus disorder prediction 127 165 - -
Cmo15g01124 340 Gene3D WRKY domain 158 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo15g01124 340 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo15g01124 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 6 334 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01124 Cmo16g00630 CCT
Cmo15g01124 Cmo16g00630 ECH
Cmo02g01102 Cmo15g01124 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01113 Cmo-Chr6:8571167 Cmo15g01124 Cmo-Chr15:7806671 1.23E-48 dispersed
Cmo15g01124 Cmo-Chr15:7806671 Cmo16g00630 Cmo-Chr16:3100583 3.05E-39 dispersed
Cmo14g02126 Cmo-Chr14:15377304 Cmo15g01124 Cmo-Chr15:7806671 1.61E-47 wgd
Cmo15g01124 Cmo-Chr15:7806671 Cmo02g01102 Cmo-Chr2:6677813 1.03E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11200 PF03106 WRKY 5.30E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01124 K13425 - cmo:103482922 410.609