Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01147 ATGTGGTTTCTTAGCAGGAAAGGCCCATCTGGGTTCTCCGCTTCTTCCACAGCTGAAGAAGTTACAGAAGGAATCGATGGGACTGGTCTCATCGCCATTGTTACAGGTGCATCAAGTGGCATTGGCAGTGAAACTGCTCGTGTCCTTGCATTGCGCGGTGTACGTGTCGTAATGGCTGTTAGGAATGTAGCAACTGGTAGGAAGGTCCAAGAAGCCATTGTCAAGGAAAACCCAACTGCCAAAGTTGATACCATGGAGTTGGACTTGAGCTCGATGGCATCTGTTCGGAATTTTGCATCAAATTTCAATTCCTCAGGTCTTCCACTGAACATTCTCGTTAATAATGCAGGAGTCATGGCCTCCCCGTTCTTGCTCTCGAAGGACAAGATAGAGTTGCAGTTTGCAACAAACCATGTGGGACATTTTCTTTTGACAAATCTGTTGTTGGAGACATTGAAAAAGACAGCAACAGAAAGCAAAAAAGAAGGAAGGATTGTCAATGTCTCATCGCGACGACACCAATTTTCGTATCGTGAAGGCATCCGATTTGACAAAATCAATGATCCATCAGGCTATAATGGTCTTTCTGCATATGGTCAATCAAAGCTTGCTAATATTTTGCATGCTTCCGAACTCGCAAGACAGCTGAAGGAAGAAGGGGTGAATATAACTGCAAATTCACTACATCCTGGAGCCATTCCTACTAACCTATTTCGTTATCACGGCCTCATCAACGGTATCAAATCTTCTACCTCGCCATTATCGTCGTCTGATCGGTTTCATAAAGCTCTGCATTCAGCTGATTTTTCTTATGTTTTAGAGCATTTGACTACTGTGATTCTTGGTTTTCTTGGCCTTGTGGGTAAACATGTCATGAAGAATGTACAGCAGGGAGCAGCGACGACATGCTATGTTGCATTACATCCGCAAATGAAAGGTATCAGTGGCCAGTATTTTGCTGATGGGAACGTTGCCAAAGCAAGCTCACAAGCTAATGATAGTGAATTGGCAAAGAAACTGTGGGACTTCACCCAAAAGTTGATATCCACCGCTTCAGAAAGTTGA 1065 43.85 MWFLSRKGPSGFSASSTAEEVTEGIDGTGLIAIVTGASSGIGSETARVLALRGVRVVMAVRNVATGRKVQEAIVKENPTAKVDTMELDLSSMASVRNFASNFNSSGLPLNILVNNAGVMASPFLLSKDKIELQFATNHVGHFLLTNLLLETLKKTATESKKEGRIVNVSSRRHQFSYREGIRFDKINDPSGYNGLSAYGQSKLANILHASELARQLKEEGVNITANSLHPGAIPTNLFRYHGLINGIKSSTSPLSSSDRFHKALHSADFSYVLEHLTTVILGFLGLVGKHVMKNVQQGAATTCYVALHPQMKGISGQYFADGNVAKASSQANDSELAKKLWDFTQKLISTASES 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8008905 8015361 + CmoCh15G011470.1 Cmo15g01147 398655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01147 354 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Cmo15g01147 354 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Cmo15g01147 354 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Cmo15g01147 354 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Cmo15g01147 354 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Cmo15g01147 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 326 IPR036291 -
Cmo15g01147 354 CDD retinol-DH_like_SDR_c_like 29 341 - -
Cmo15g01147 354 PANTHER RETINOL DEHYDROGENASE 2 348 - -
Cmo15g01147 354 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 348 - -
Cmo15g01147 354 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Cmo15g01147 354 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Cmo15g01147 354 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
Cmo15g01147 354 Pfam short chain dehydrogenase 31 173 IPR002347 -
Cmo15g01147 354 Gene3D - 23 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01147 - - - csv:101213775 527.324
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo02g01090 Cmo15g01147 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01147 Cmo-Chr15:8008905 Cmo16g00644 Cmo-Chr16:3175325 7.07E-156 dispersed
Cmo15g01146 Cmo-Chr15:8002367 Cmo15g01147 Cmo-Chr15:8008905 7.47E-157 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g720 . Blo15g00173 . . . . . . . . Cma02g01074 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00121 . . . . . . . . . . . Cmo02g01090 Cmo15g01147 . . . . . Cpe13g00263 Bhi12g00032 . . . . . Lcy12g0040 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01147 Cmo_Chr15 FPKM 0.154122 0.15011 0.0 0.0 1.340629 1.80341 1.201459 0.0 0.054226 0.0