Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01154 ATGCAAAATGCACCGCTTTTACTCCATTTCCCCATTTTGCCCTCCCCCTTCTCAGTGTCCTCTATTTCAGCTACTGCTTCTGCTACTGCCCTTCCTTATTTCAGCTCACTAATCCGCAGTCGAGTTACCGCCCCAAACTCCAGGGTTTCTGTTCTTCCAAGAGGAGTTTGTCTTAGGGCAATGCCTTCTACTGGTGGTGGCGACGGCGACGTTAATGGTGGTGCTTTCTCTGGCTTCAGCCTCTCTGAATCCTCGTTCTTGGCCTCCTTAATGCCTAAGAAGGAAATTGCTGCTGATCGCTTCATCGAGGCTAATCCTGAGTTCGATGGCCGTGGTGTTTTGATTGCCATTTTTGATAGCGGTGTTGACCCTGCTGCTGCGGGATTGCAAGTGACATCAGATGGAAAGCCTAAAATATTGGATATTCTTGATTGTACGGGAAGCGGCGATGTTGATATCTCGAAGGTGGTGAAGGCCGATGCAGATGGTTGCATAATTGGAGCTTCAGGGGCTTCTTTGGTTGTCAATTCTTCGTGGAAGAACCCATCTGGTGAATGGCATGTGGGCTATAAATTCGTCTATGAGCTATTTACTGACACATTGATTTCTCGTTTGAAGCGAGAGAGAAAGAAGGAATGGGATGAAAAGAACCAGGAGGAGATTGCCAAGGCTGTCAAGGTTCTTGATGAATTTGATCAGAAGCACACCAAGGTGGAGGACCCAAATCTGAAAAGGGTACGTGAGGACCTTCAATGCCGAGTTGATATTCTTAAAAAACAAGCTGAGTGCTATGATGACAAGGGGCCAATCATTGATGCTGTTGTTTGGCATGATGGAGAAGTATGGAGAGTTGCTCTTGACACACAAAGCCTTGAGGATGATCCTGACTCCGGAAAACTTGCCAACTTTGTACCACTAACAAATTATAAGATCGAAAGAAAGTTTGGCGTGTTTAGCAAGTTGGATGCTTGTACATTTGTTGTAAATGTGTATGATGAGGGAAATATCTTAAGTATAGTTACGGATTGCTCCCCTCATGGTACTCATGTTGCTGGTATTGCTTCTGCTTTCCACCCAAAGGAACCCTTGTTGAACGGAGTTGCTCCCGGTGCACAATTGATATCTTGTAAAATTGGAGACACACGTTTAGGGTCAATGGAGACTGGAACCGGGCTGACTCGAGCGTTGATAGCAGCTGTGGAGCATAAATGTGATCTCATAAATATGAGTTATGGTGAGCCGACATTACTTCCGGACTATGGTCGCTTTATTGACCTTGTAAATGAGGCGGTAAACAAGTACCGGTTGATATTTGTGAGCAGTGCTGGTAATAGTGGGCCAGCTTTGAATACTGTTGGTGCTCCTGGTGGCACGAGTTCAAGCATTATAGGAGTTGGTGCTTATGTTTCTCCATCGATGGCTGCTGGTGCTCATTGTGTGGTTGAAGCTCCCAGTGAAGGGCTTGAATATACTTGGTCGAGTCGTGGACCAACGGCAGATGGAGATCTTGGTGTTTGTATAAGTGCTCCTGGTGCTGCTGTTGCTCCTGTTCCTACATGGACCCTTCAAAGGCGAATGCTTATGAACGGAACCTCTATGGCGTCTCCATCTGCTTGTGGGGGTATTGCATTACTCATTAGTGCAATGAAGGCTGAGAACATTCCTGTGAGCCCATACCTCGTGAGGAAGGCTCTTGAGAATACTACCATTCCGGTAGGTTGCTTACCAGAAGATAAATTATCCACTGGACAGGGGCTCATGCAAGTTGACAAGGCATACGAATATATAAGGAAGTCCCAGAATGTTCCATATGTTTGGTATAAAGTGAAGATTAATCAATCTGGAAAATTATCTCCCACAACACGAGGAATTTACTTAAGAGAGGCTAGTGCCTGCCGTCAAAGTTCTGAGTGGACAGTACAAATCGAACCTCAGTTTCATGAAGATGCAAATAACTTAGATGAGTTAGTCCCTTTTGAGGAGTGTATCGCGCTGCATTCCAGTGAGAAAACTGTCGTCACTGTTCCTGATTATTTGCTTCTCACACATAATGGACGCAGCTTCAACGTAGTGGTTGATCCTTCGAATCTTAGTGATGGCCTGCACTACTATGAACTCTATGGCGTTGATTGCAAGGCTCCATGGCGAGGCCCTCTTTTCAGGATCCCAGTAACTATAACAAAGCCAGTAGTTGTGGTGGATCGCCCCCCAATAGTTTCTTTTCCAAGAATGTCGTTTCTACCAGGCCATATAGAACGGAGATTTATAGAGGTACCACGTGGTACTAGTTGGGTTGAAGCAACAATACAAACAACAGGATTTGACACAACGAGGAAATTTTTTATTGACACTGTCCAGATTTTGCCCTTGAAGAGGCCTTTGAAGTGGGAAAGTGTGGTAACTTTCTCGTCTCCTGCTTCCAAAAGTTTTTGTTTTCCTGTTGTGGGTGGCCAGACTATGGAACTAGCAATTGCTCAATTTTGGTCAAGTGGCATTGGAAGTAGGGAATCATCCCTCGTTGATTTTGAGGTAACATTTCATGGGATTAGTACCAATAAAGATGAAATAGTGCTTGATGGAAGTGAAGCACCCGTTAGAATTGATGCTGAAGCTTTGTTGGCATCAGAAAAACTTACTCCTGCGGCCATCCTGAACAAGGTAAAAGTTCCATATCGGCCATGTGAAGCCAAACTTTGCACACTGCCTACAGATCGTGACAGATTGCCATGTGGAAAACAGATTTTATCACTAACTCTAACTTACAAGTTCAAATTAGAAGATGCTGCAGAAGTGAAACCTTCTATTCCATTGTTTAATGACCGGATATATGACAACAAATTTGAGTCTCAGTTTTATATGATCTCTGATGCAAATAAGCGTATTTATGCAACTGGTGATGCATACCCTAAGTTTAAAAAACTTCCCAAGGGAGAATACAATTTACAGCTGCATATAAGGCACGAGGACGTGCAATGTCTGGAAAAAATGAAGCAGTTGGTGGTGTTTATAGAAAGAAAATTGGACGAGAAGGATTCCATTAAATTGAGCTTTTTCTCTCTACCTGATGGTCCTATGATGGGGAATGGTGCTTACAAATCCTCAGTTTTAGTTCCTGGGAAAAAAGAAGCATTCTATTTGGGCCCACCATCAAAAGATAAGTTTCCCAAGAATTCTCCTCATGGGTCGGTTCTGTCGGGAGCTATCTCATATGCAAAGCTAGGTATTTTTAGTTCAAATGTTAAGGAAAATTCACGGAAGATGCCTGTATATTATCAACTTTCCTTCATAGTGCCACCAACTAAGCCCGATGAAGACAAGGGTAAAGGTTCTTCTCCAGCCTTGACAAAGACAATTTCCGAGCGTCTGATGGAAGAGGTCCGTGATGCGAAGATCAAAGTACTTTCAAGCCTAAAACCAGAAAAAACTGAAGATTTTGCAGAATGGAAGAAGTTGTGCTCATCCCTCAAGGTCATTGATGCTGCAAACGAGGTAGTTGATAGCATAGACAGAGATGAGTTGGCCAAATATTTTGCACTGAAAAATGATCCTGAAGATGAAGACGTTGAGAAACTTAAGAAGAAGATGGAGGTTACCCGGGATCAATTGGCAGAGGCACTATACCAAAATGGGCTTGCGTTGGCAGAATTGGAGTCTTTAAAGACCAAGGTTGAGAATGCTTCGACACTTGCTCCAAAAGACGCAATAGATGCTGGGAAATCTGAGGATTCTTTTGAAGAGAATTTCAAAGAACTGAAGAAATGGGTAGATGTCAAGACCTCTAAGTTCGGAACTCTTGCAGTGTTGCGCGAAAAACGCCGTGGAAGGCTAGGTGCAGCTCTGAAGGTAGTTAATGATGTTATTGAAAACGACGGAGATACTCCGAAGAAGAAACTCTACGAACTGAAGCTGTCTTTGCTGGAGGAGATTGGTTGGTCTCATTTGGTATCATATGAAAAGCAATGGATGCATGTACGCTTTCCCACAACCCTGCCTCTATTTTAA 4002 43.68 MQNAPLLLHFPILPSPFSVSSISATASATALPYFSSLIRSRVTAPNSRVSVLPRGVCLRAMPSTGGGDGDVNGGAFSGFSLSESSFLASLMPKKEIAADRFIEANPEFDGRGVLIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDVDISKVVKADADGCIIGASGASLVVNSSWKNPSGEWHVGYKFVYELFTDTLISRLKRERKKEWDEKNQEEIAKAVKVLDEFDQKHTKVEDPNLKRVREDLQCRVDILKKQAECYDDKGPIIDAVVWHDGEVWRVALDTQSLEDDPDSGKLANFVPLTNYKIERKFGVFSKLDACTFVVNVYDEGNILSIVTDCSPHGTHVAGIASAFHPKEPLLNGVAPGAQLISCKIGDTRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFIDLVNEAVNKYRLIFVSSAGNSGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHCVVEAPSEGLEYTWSSRGPTADGDLGVCISAPGAAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAENIPVSPYLVRKALENTTIPVGCLPEDKLSTGQGLMQVDKAYEYIRKSQNVPYVWYKVKINQSGKLSPTTRGIYLREASACRQSSEWTVQIEPQFHEDANNLDELVPFEECIALHSSEKTVVTVPDYLLLTHNGRSFNVVVDPSNLSDGLHYYELYGVDCKAPWRGPLFRIPVTITKPVVVVDRPPIVSFPRMSFLPGHIERRFIEVPRGTSWVEATIQTTGFDTTRKFFIDTVQILPLKRPLKWESVVTFSSPASKSFCFPVVGGQTMELAIAQFWSSGIGSRESSLVDFEVTFHGISTNKDEIVLDGSEAPVRIDAEALLASEKLTPAAILNKVKVPYRPCEAKLCTLPTDRDRLPCGKQILSLTLTYKFKLEDAAEVKPSIPLFNDRIYDNKFESQFYMISDANKRIYATGDAYPKFKKLPKGEYNLQLHIRHEDVQCLEKMKQLVVFIERKLDEKDSIKLSFFSLPDGPMMGNGAYKSSVLVPGKKEAFYLGPPSKDKFPKNSPHGSVLSGAISYAKLGIFSSNVKENSRKMPVYYQLSFIVPPTKPDEDKGKGSSPALTKTISERLMEEVRDAKIKVLSSLKPEKTEDFAEWKKLCSSLKVIDAANEVVDSIDRDELAKYFALKNDPEDEDVEKLKKKMEVTRDQLAEALYQNGLALAELESLKTKVENASTLAPKDAIDAGKSEDSFEENFKELKKWVDVKTSKFGTLAVLREKRRGRLGAALKVVNDVIENDGDTPKKKLYELKLSLLEEIGWSHLVSYEKQWMHVRFPTTLPLF 1333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8051399 8074308 + CmoCh15G011540.1 Cmo15g01154 398662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01154 1333 Pfam Tripeptidyl peptidase II 873 1057 IPR022229 -
Cmo15g01154 1333 PANTHER TRIPEPTIDYL PEPTIDASE II 72 1234 - -
Cmo15g01154 1333 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 90 572 IPR034051 GO:0006508|GO:0008240
Cmo15g01154 1333 Gene3D - 606 738 - -
Cmo15g01154 1333 Coils Coil 247 267 - -
Cmo15g01154 1333 ProSitePatterns Serine proteases, subtilase family, histidine active site. 346 356 IPR022398 -
Cmo15g01154 1333 Gene3D - 209 266 - -
Cmo15g01154 1333 PRINTS Subtilisin serine protease family (S8) signature 342 355 IPR015500 -
Cmo15g01154 1333 PRINTS Subtilisin serine protease family (S8) signature 110 129 IPR015500 -
Cmo15g01154 1333 PRINTS Subtilisin serine protease family (S8) signature 529 545 IPR015500 -
Cmo15g01154 1333 PANTHER PEPTIDASE S8 72 1234 - -
Cmo15g01154 1333 Pfam Subtilase family 110 569 IPR000209 GO:0006508|GO:0008236
Cmo15g01154 1333 Gene3D - 1149 1333 - -
Cmo15g01154 1333 Gene3D Peptidase S8/S53 domain 271 603 IPR036852 GO:0004252|GO:0006508
Cmo15g01154 1333 Gene3D Peptidase S8/S53 domain 93 185 IPR036852 GO:0004252|GO:0006508
Cmo15g01154 1333 ProSitePatterns Serine proteases, subtilase family, serine active site. 530 540 IPR023828 -
Cmo15g01154 1333 Coils Coil 1188 1208 - -
Cmo15g01154 1333 SUPERFAMILY Subtilisin-like 96 603 IPR036852 GO:0004252|GO:0006508
Cmo15g01154 1333 ProSiteProfiles Serine proteases, subtilase domain profile. 84 593 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01154 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - csv:101220162 2361.64
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01154 Cmo_Chr15 FPKM 2.902141 1.729009 7.96997 6.685254 40.437714 44.370571 34.436771 6.721341 6.341727 6.256413