Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01157 ATGAACCGGAGCACTAAATCAGAGCCGGATTTTGGTTTTCTTGAGCCAATACGCCGTCACCTGTTGGGCGAACCGGAGGCTGCCGTCGCCGCCTCTGTCGTTCCCGGCGATCAGACTGGTAATTTCAGTAGCTTGATTCCATGTCTTGAAGAAAATTGGGGTGATTTGCCTCTCAAGGTGGACGATTCTGAAGACATGTTGCTCGCCGCCGTTCTCCGGGAAGCCGTCGGTTATGGATGGGTTCCGACGCTCAATCCGTCGTCATTTGGAAGTTTCGATTTTGGGGTCTTGGCGGTGAAGTCGGAGCTTCCGGAAAGTTTTCCCCCGGTGATGGAACCGGAGAGGGGGAAGCATTATAGAGGAGTGCGGCAACGACCATGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTAGGAACTTACGAGACGGCGGAGGATGCGGCTTTAGCTTATGATCGGGCAGCCTTCCGTATTCGTGGGTCAAGGGCTCTTCTCAATTTCCCCCTCCGTGTGAACTCCGGCGAGCCCGAACTGGTTCGGGTCAGGTCGAAGCGATCCTCGCCTGAGCTTTCATTGTCGCCGAAGCGGCGGAAGAAGGTTGGCTCCGCCGCCGAAGGTGGGGGAGTACAAGTGGACAACACAAGTGGCAAGCCTTACACGTGGAGGGCAGCTGATTGTCAGCCAATGCTAATATTTAAATAA 726 55.51 MNRSTKSEPDFGFLEPIRRHLLGEPEAAVAASVVPGDQTGNFSSLIPCLEENWGDLPLKVDDSEDMLLAAVLREAVGYGWVPTLNPSSFGSFDFGVLAVKSELPESFPPVMEPERGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAFRIRGSRALLNFPLRVNSGEPELVRVRSKRSSPELSLSPKRRKKVGSAAEGGGVQVDNTSGKPYTWRAADCQPMLIFK 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8084427 8085152 - CmoCh15G011570.1 Cmo15g01157 398665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01157 241 PANTHER BNAANNG21280D PROTEIN 38 217 - -
Cmo15g01157 241 Gene3D AP2/ERF domain 117 179 IPR036955 GO:0003700|GO:0006355
Cmo15g01157 241 SMART rav1_2 118 182 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 MobiDBLite consensus disorder prediction 188 219 - -
Cmo15g01157 241 Pfam AP2 domain 118 168 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 PANTHER DNA-BINDING DOMAIN 38 217 IPR044808 GO:0003700|GO:0009873
Cmo15g01157 241 PRINTS Ethylene responsive element binding protein signature 142 158 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 CDD AP2 117 176 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 ProSiteProfiles AP2/ERF domain profile. 118 176 IPR001471 GO:0003700|GO:0006355
Cmo15g01157 241 SUPERFAMILY DNA-binding domain 118 178 IPR016177 GO:0003677
Cmo15g01157 241 MobiDBLite consensus disorder prediction 188 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01608 Cmo-Chr2:9252223 Cmo15g01157 Cmo-Chr15:8084427 7.58E-113 dispersed
Cmo15g01157 Cmo-Chr15:8084427 Cmo16g01167 Cmo-Chr16:8316409 9.59E-80 dispersed
Cmo15g01157 Cmo-Chr15:8084427 Cmo06g00825 Cmo-Chr6:4480571 8.75E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11204 PF00847 AP2 1.20E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01157 K09286 - csv:101221583 309.686