Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo15g01157 | ATGAACCGGAGCACTAAATCAGAGCCGGATTTTGGTTTTCTTGAGCCAATACGCCGTCACCTGTTGGGCGAACCGGAGGCTGCCGTCGCCGCCTCTGTCGTTCCCGGCGATCAGACTGGTAATTTCAGTAGCTTGATTCCATGTCTTGAAGAAAATTGGGGTGATTTGCCTCTCAAGGTGGACGATTCTGAAGACATGTTGCTCGCCGCCGTTCTCCGGGAAGCCGTCGGTTATGGATGGGTTCCGACGCTCAATCCGTCGTCATTTGGAAGTTTCGATTTTGGGGTCTTGGCGGTGAAGTCGGAGCTTCCGGAAAGTTTTCCCCCGGTGATGGAACCGGAGAGGGGGAAGCATTATAGAGGAGTGCGGCAACGACCATGGGGGAAGTTCGCGGCGGAGATTCGGGACCCGGCGAAAAATGGCGCTAGAGTTTGGCTAGGAACTTACGAGACGGCGGAGGATGCGGCTTTAGCTTATGATCGGGCAGCCTTCCGTATTCGTGGGTCAAGGGCTCTTCTCAATTTCCCCCTCCGTGTGAACTCCGGCGAGCCCGAACTGGTTCGGGTCAGGTCGAAGCGATCCTCGCCTGAGCTTTCATTGTCGCCGAAGCGGCGGAAGAAGGTTGGCTCCGCCGCCGAAGGTGGGGGAGTACAAGTGGACAACACAAGTGGCAAGCCTTACACGTGGAGGGCAGCTGATTGTCAGCCAATGCTAATATTTAAATAA | 726 | 55.51 | MNRSTKSEPDFGFLEPIRRHLLGEPEAAVAASVVPGDQTGNFSSLIPCLEENWGDLPLKVDDSEDMLLAAVLREAVGYGWVPTLNPSSFGSFDFGVLAVKSELPESFPPVMEPERGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAFRIRGSRALLNFPLRVNSGEPELVRVRSKRSSPELSLSPKRRKKVGSAAEGGGVQVDNTSGKPYTWRAADCQPMLIFK | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
15 | 8084427 | 8085152 | - | CmoCh15G011570.1 | Cmo15g01157 | 398665 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo15g01157 | 241 | PANTHER | BNAANNG21280D PROTEIN | 38 | 217 | - | - | |
Cmo15g01157 | 241 | Gene3D | AP2/ERF domain | 117 | 179 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | SMART | rav1_2 | 118 | 182 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | MobiDBLite | consensus disorder prediction | 188 | 219 | - | - | |
Cmo15g01157 | 241 | Pfam | AP2 domain | 118 | 168 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | PANTHER | DNA-BINDING DOMAIN | 38 | 217 | IPR044808 | GO:0003700|GO:0009873 | |
Cmo15g01157 | 241 | PRINTS | Ethylene responsive element binding protein signature | 142 | 158 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | PRINTS | Ethylene responsive element binding protein signature | 119 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | CDD | AP2 | 117 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | ProSiteProfiles | AP2/ERF domain profile. | 118 | 176 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo15g01157 | 241 | SUPERFAMILY | DNA-binding domain | 118 | 178 | IPR016177 | GO:0003677 | |
Cmo15g01157 | 241 | MobiDBLite | consensus disorder prediction | 188 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01608 | Cmo-Chr2:9252223 | Cmo15g01157 | Cmo-Chr15:8084427 | 7.58E-113 | dispersed | |
Cmo15g01157 | Cmo-Chr15:8084427 | Cmo16g01167 | Cmo-Chr16:8316409 | 9.59E-80 | dispersed | |
Cmo15g01157 | Cmo-Chr15:8084427 | Cmo06g00825 | Cmo-Chr6:4480571 | 8.75E-31 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11204 | PF00847 | AP2 | 1.20E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo15g01157 | K09286 | - | csv:101221583 | 309.686 |