Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01181 ATGGAAATTTGCAGGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGGGGGAAAGAGACGACGGTGATAGAGTGGCACGACCGAGCAGGTGACCGTGGTCCCAGCGGGCAGCAGCTGCGTACTTACAGAACAGCTTCTGTCACAGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGGTAAAAATAAGTACCCCACCAACACTTTCCACTGCCCTGCCCAATACGGCACCGGCGCCAATGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTTCGTATTTCCGGTGACAAGGCCTACTTTTCCGGGTGTGGATTCTACGGCGCACAAGACACCCTCTGTGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATAGAAGGCTCCATAGACTTCATTTTTGGCAACGGGCGTTCCATTCCTTGCAAAATAGTTAGCTTTCTTACATACTTAAAATGGAAAGCTTTTAAAATAATTATAACAAAATCATTAAACGGCAACGATTGCGAGCTGCACTCGATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCTAACGAGAAGACCGGGTTCGCTTTCGTCCGATGCAAGGTGACCGGTTCTGGACCTATATACGTGGGCCGGGCTATGGGCCAGTACTCCAGAATCGTCTACGCGTATACATACTTTGATGACGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACACCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGCCCAGGAGCAAGTAAAGTAAAGGGAGTATCATGGGCCAAGGAATTGGAGTTTGAAGAGGCCCATCCATTTCTTGTGAAGAGTTTTGTGAATGGCAGGCACTGGATTGCACCCTCTGATGCGTAG 924 50.87 MEICREKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKVKISTPPTLSTALPNTAPAPMPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSIPCKIVSFLTYLKWKAFKIIITKSLNGNDCELHSIATRFGSIAAQDRNSPNEKTGFAFVRCKVTGSGPIYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHTSNKNKTVFFGVYKCWGPGASKVKGVSWAKELEFEEAHPFLVKSFVNGRHWIAPSDA 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8208820 8210277 - CmoCh15G011810.1 Cmo15g01181 398689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01181 307 Pfam Pectinesterase 5 298 IPR000070 GO:0030599|GO:0042545
Cmo15g01181 307 ProSitePatterns Pectinesterase signature 2. 135 144 IPR033131 -
Cmo15g01181 307 Gene3D - 2 306 IPR012334 -
Cmo15g01181 307 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 306 - -
Cmo15g01181 307 SUPERFAMILY Pectin lyase-like 5 304 IPR011050 -
Cmo15g01181 307 PANTHER PECTINESTERASE 68-RELATED 5 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01181 Cmo-Chr15:8208820 Cmo10g00703 Cmo-Chr10:3224522 7.65E-86 dispersed
Cmo15g01181 Cmo-Chr15:8208820 Cmo02g01584 Cmo-Chr2:9136644 2.18E-180 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01181 - - cmo:103483059 520.39