Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01186 ATGGCTAAGAGCTACTTCAAGCAAGAGCATGATCTTGGTAGTCTTCTACTCCATGCTTTGAAATATTATATAAAAACTGATAAGTTTTCCATGTTTGTTTTACTAGAGAAAAGAAAAGCAGAGGCCGCAAGGATTAGAGAGAAATATCCTGATAGAATCCCAGTTATAGTGGAGAAGGCAGAGAGAAGTGACATCCCTAGCATTGATAAGAAGAAGTACCTAGTTCCAGCAGACCTTACCGTCGGACAGTTTGTTTATGTCATCCGTAAAAGGATTAAACTCAGCCCAGAGAAAGCGATCTTTATATTCGTCGACAATGTCCTCCCTCCTACAGGAGCAATCATGTCTGCAATATATGAAGAGAAGAAGGATGAAGATGGATTCCTGTATGTTACTTACAGTGGAGAGAACACGTTCGGGTTCGGGAATAGAACGGTTTACAATGTGGAGTATAATTGA 459 40.09 MAKSYFKQEHDLGSLLLHALKYYIKTDKFSMFVLLEKRKAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGFGNRTVYNVEYN 152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8235637 8238431 + CmoCh15G011860.1 Cmo15g01186 398694

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01186 152 CDD Ubl_ATG8 35 137 - -
Cmo15g01186 152 Pfam Autophagy protein Atg8 ubiquitin like 37 140 IPR004241 -
Cmo15g01186 152 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 35 141 IPR004241 -
Cmo15g01186 152 Gene3D - 18 141 - -
Cmo15g01186 152 PANTHER AUTOPHAGY-RELATED PROTEIN 35 141 - -
Cmo15g01186 152 SUPERFAMILY Ubiquitin-like 31 140 IPR029071 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01186 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - csv:101205863 221.476
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00561 Cmo-Chr3:5544117 Cmo15g01186 Cmo-Chr15:8235637 8.67E-59 dispersed
Cmo15g01186 Cmo-Chr15:8235637 Cmo13g00774 Cmo-Chr13:7467880 2.73E-65 dispersed
Cmo15g01186 Cmo-Chr15:8235637 Cmo02g01587 Cmo-Chr2:9150490 3.62E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g525 . . . . . . Bma07g01599 . . . . Cma15g01127 . Car15g01032 . . . . . . . . . . . . . . . . . Cone8ag0393 . Cone6ag0676 Cone9ag0681 . Csa05g00416 Chy09g01093 . . Blo19g00255 . Bda09g00097 Bpe08g00875 . . . . . Cmo15g01186 . . . . . Cpe13g00229 Bhi12g00436 . . Lac11g2279 . . Lcy12g1824 Cla09g01215 Cam09g1280 Cec09g1296 Cco09g1326 . . Cre09g1240 . . . Cme09g01622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01186 Cmo_Chr15 FPKM 8.210136 10.241466 3.393756 2.153608 1.9198 2.585329 1.640458 0.0 0.0 0.0