Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01187 ATGGAGAAGAGTTCATCAGCATCTTCCTTAGGTCCAGGCGGCCTTGACATTTCGCAGGCTTTCTTCAAGCCTGTAAGCGACGCCTCTCCGCCGTCTACCTCTAAGCGCAACACCAAAATCTCCGTCATCGGCGCTGGAAATGTCGGCATGGCCATTGCTCAGACCATCCTCACTCAAGATCTTGCCGATGAACTCGTCCTTGTCGACGCCAAGCCTGACAAACTCCGAGGCGAAATGCTCGATCTCCAACACGCCGCTGCTTTCCTTCCACGCACTAAAATCAGCGCCTCTACCGATTACTCTGTTACTGCCGAGTCCGATCTTTGCATCGTCACTGCTGGTGCTCGCCAGATCGCTGGTGAATCTAGGTTGAATCTGCTGCAGAGGAATGTTGCTCTGTTTCAGAAGATCGTGCCGCCGCTTGTTCAGTACTCTCCCGAGACGATTCTGCTGATCGTTTCGAATCCGGTGGATGTTTTGACTTATGTTGCTTGGAAGCTCTCTGGTTTTCCGTCGAATCGAGTGATTGGATCGGGAACGAATCTGGATTCGTCTAGGTTTCGGTTTCTCATCGCTGATCATCTCGACGTCAACGCTCAGGATGTTCAGGCATACATAGTGGGAGAGCACGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGCGTGGGCGGAGTGCCAATACTGAGCTTTCTACAGAATCAACAAATCACCTACGAGAAGGAAACATTAGAGAGCATTCACAAAGAGAGGAGGCGTAGAGAAACACTTTCTTGGCCATCGAAAACTGCAGAGAGATCGCCGCTCAGCGGCGATGCTACCTTGGCTTCGGTGAGAATATGTCTAACCCATGAAGAGGGATTGTCGCTTAGCGACGATGCTGACTTGGCTCTGGTGAGAATATGTCTAACCCCAAGAAGTAGCAGGGGAAACCTAGAGCAAGGGACAAAGACAATGTTGAAGTCAGAAGAGTCGCCACATTGGGCGAATGAGCCAATTTTGGCGAGAAGGGCAGCTGGAAGAGTCGCCACATTGGGGCGAAGGAGCCAATTTTGGCGAGAAGGGCGGCGGCAACTTGGTTGGCGAAGATGCCAGTGCGGCGCCCAGATTCCAAAGAGTATGGCGAAGGATGATTTGGAGGTCAAAAAGGTGGAGCCGAAGAATAATCAATCGACTCTGCATGTGACAGCCATGACAATTGCCCCTGCGGCATCAAAGACAACAGTAGTGGTGGAGAAGAACAGTAGAAGATTTCAAAAGCCATTGAAAAGAAAGGATCTAGTGGGAGAGCACGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGCGTGGGCGGAGTGCCAATACTGAGCTTTCTACAGAATCAACAAATCACCTACGAGAAGGAAACATTAGAGAGCATTCACAAAGAGGTCATAGGCGGGGCTTATGAAGTGATAAACTTGAAGGGCTACACATCGTGGGCGATCGGCTACTCGGTGGCAAGCCTCGCCCGGTCGCTCCTCCGTGACCAGCGGAGGATCCACCCTGTCTCTGTCCTTGCTAAAGGGTTCTACGGCATCAATGGAGGTGAGCTGTTCCTCAGCCTGCCCGCGCAGCTTGGTAGGGGCGGAGTATTGGGGATCACCAATGTGCATCTAACCGACGAGGAGTCGGGACGGCTGAGGGACTCAGCCAACACCATCTTGCAGGCATACATAGTGGGAGAGCACGGCGACAGCTCGGTGGCGCTATGGTCAAGCATAAGCGTGGGCGGAGTGCCAATACTGAGCTTTCTACAGAATCAACAAATCACCTACGAGAAGGAAACATTAGAGAGCATTCACAAAGAGGTCATAGGCGGGGCTTATGAAGTGATAAACTTGAAGGGCTACACATCGTGGGCGATCGGCTACTCGGTGGCAAGCCTCGCCCGGTCGCTCCTCCGTGACCAGCGGAGGATCCACCCTGTCTCTGTCCTTGCTAAAGGGTTCTACGGCATCAATGGAGGTGAGCTGTTCCTCAGCCTGCCCGCGCAGCTTGGTAGGGGCGGAGTATTGGGGATCACCAATGTGCATCTAACCGACGAGGAGTCGGGACGGCTGAGGGACTCAGCCAACACCATCTTGCAGGTGCAGACCCAGTTGGGGATCTGA 2136 53.18 MEKSSSASSLGPGGLDISQAFFKPVSDASPPSTSKRNTKISVIGAGNVGMAIAQTILTQDLADELVLVDAKPDKLRGEMLDLQHAAAFLPRTKISASTDYSVTAESDLCIVTAGARQIAGESRLNLLQRNVALFQKIVPPLVQYSPETILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPILSFLQNQQITYEKETLESIHKERRRRETLSWPSKTAERSPLSGDATLASVRICLTHEEGLSLSDDADLALVRICLTPRSSRGNLEQGTKTMLKSEESPHWANEPILARRAAGRVATLGRRSQFWREGRRQLGWRRCQCGAQIPKSMAKDDLEVKKVEPKNNQSTLHVTAMTIAPAASKTTVVVEKNSRRFQKPLKRKDLVGEHGDSSVALWSSISVGGVPILSFLQNQQITYEKETLESIHKEVIGGAYEVINLKGYTSWAIGYSVASLARSLLRDQRRIHPVSVLAKGFYGINGGELFLSLPAQLGRGGVLGITNVHLTDEESGRLRDSANTILQAYIVGEHGDSSVALWSSISVGGVPILSFLQNQQITYEKETLESIHKEVIGGAYEVINLKGYTSWAIGYSVASLARSLLRDQRRIHPVSVLAKGFYGINGGELFLSLPAQLGRGGVLGITNVHLTDEESGRLRDSANTILQVQTQLGI 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8240313 8245327 + CmoCh15G011870.1 Cmo15g01187 398695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01187 711 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Cmo15g01187 711 Gene3D - 179 285 IPR015955 GO:0003824|GO:0016616
Cmo15g01187 711 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
Cmo15g01187 711 PANTHER L-LACTATE DEHYDROGENASE 1 250 - -
Cmo15g01187 711 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Cmo15g01187 711 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Cmo15g01187 711 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Cmo15g01187 711 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Cmo15g01187 711 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Cmo15g01187 711 ProSitePatterns L-lactate dehydrogenase active site. 568 574 IPR018177 GO:0004459
Cmo15g01187 711 Gene3D - 564 709 IPR015955 GO:0003824|GO:0016616
Cmo15g01187 711 Gene3D - 424 563 IPR015955 GO:0003824|GO:0016616
Cmo15g01187 711 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 177 IPR036291 -
Cmo15g01187 711 SUPERFAMILY LDH C-terminal domain-like 428 564 IPR015955 GO:0003824|GO:0016616
Cmo15g01187 711 PANTHER L-LACTATE DEHYDROGENASE 427 564 - -
Cmo15g01187 711 PANTHER L-LACTATE DEHYDROGENASE 563 711 - -
Cmo15g01187 711 Gene3D - 34 178 - -
Cmo15g01187 711 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 427 564 - -
Cmo15g01187 711 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 250 - -
Cmo15g01187 711 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 563 711 - -
Cmo15g01187 711 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 245 IPR022383 GO:0016616
Cmo15g01187 711 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 427 562 IPR022383 GO:0016616
Cmo15g01187 711 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 564 703 IPR022383 GO:0016616
Cmo15g01187 711 SUPERFAMILY LDH C-terminal domain-like 178 254 IPR015955 GO:0003824|GO:0016616
Cmo15g01187 711 ProSitePatterns L-lactate dehydrogenase active site. 428 434 IPR018177 GO:0004459
Cmo15g01187 711 SUPERFAMILY LDH C-terminal domain-like 564 708 IPR015955 GO:0003824|GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01187 K00016 LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27] - csv:101217863 458.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01542 Cmo-Chr4:7888985 Cmo15g01187 Cmo-Chr15:8240313 7.83E-104 dispersed
Cmo09g01036 Cmo-Chr9:5556538 Cmo15g01187 Cmo-Chr15:8240313 1.46E-66 dispersed
Cmo15g01187 Cmo-Chr15:8240313 Cmo14g01240 Cmo-Chr14:10483084 1.36E-08 dispersed
Cmo15g01187 Cmo-Chr15:8240313 Cmo02g01587 Cmo-Chr2:9150490 1.01E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g521 . . . . . . . Bma14g00041 . . . Cma15g01128 . Car15g01033 . . . . . . . . . . . . . . . . . . . Cone6ag0679 Cone9ag0684 . Csa05g00415 Chy09g01095 . Blo03g00416 . Bda07g00006 . . Bpe11g00266 . . . . Cmo15g01187 . . . . . Cpe13g00228 Bhi12g00434 . . . . . Lcy12g1823 Cla01g00391 Cam01g0408 Cec01g0400 Cco01g0421 Clacu01g0409 Cmu01g0390 Cre09g2120 Lsi09g00417 . . Cme09g01623
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003498 1 3 0 1 1 1 2 2 1 1 1 1 2 2 2 2 1 2 2 1 2 0 2 1 3 1 2 2 2 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01187 Cmo_Chr15 FPKM 11.103448 13.333948 7.346604 7.71483 11.63157 10.621125 11.766621 12.184649 10.884241 11.748354