Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01208 ATGAGTCTTTCATCTCTTAATTCGTGTTCTACCCACCCAAGATTCAGTGGAATGGCTCCCATTCGTAACTTATTCATCTTTCTCCTTCCTATTTGCTTGTTTGTAACCCTTTCCTCGGCTGCAGATCCGTTTGCTTTCTTTAATTTTGAAGTCTCCTACATCACTGCTTCTCCTCTGGGTGTTCCTCAACAGGTTATTGCTATAAATGGGAAGTTTCCTGGTCCTCCTATCAATGTAACTACGAACAACAATGTAGTTATCAATGTCCGAAACAAGTTGGATGAGAGCCTCCTCATGCATTGGTCTGGAGTTCAACAGCGGAGAAGTTCATGGCAAGATGGTGTTCTTGGAACTAATTGTCCAATTCCTCCCAAGTGGAACTGGACTTACCAGTTTCAAGTTAAGGATCAGATAGGGAGCTTCTTTTACTTTCCATCGCTCCATTTCCAGAGAGCGTCGGGTGGATTCGGTGGTATTATTATTAACAACAGACCTATAATCCCCATTCCTTTTGCTACCCCAGATGGAGACATTGTAATTTTGATTGGTGATTGGTACACCAGGAATCACACGGCTTTGAGAAAAACCCTTGATGATGGGAAGGATCTTGGAATGCCACATGGTGTTCTCATTAATGGCAAAGGCCCTTACAGATATAACGACACGCTAGTCCCTGATGGTATCGAACACGAAACAATTGAAGTTCATCCAGGGAAGACGTACCGAATTCGCGTGCACAATGTTGGAATATCTACTAGTCTGAATTTCAGGATACAAAACCACAATCTTCTTTTAGCAGAAACAGAGGGGTCATATACAGTGCAACAGAATTATACTAGCTTAGATATACATGTAGGACAGTCATATTCATTTTTGGTAACCATGGATCAGAACGCGAGCACTGATTATTACATTGTAGCTAGTGCTCGGTTTGTCAACGAGTCTCTTTGGAAAAGAGTTACAGGTGTTGCTATCTTGCATTACTCTAATTCCAAAGGAAAGGCAGCTGGTCCTCTTCCGGAAGCACCAAATGATGAGTTTGATAAAACTTTCTCAATGAACCAGGCAAGATCAATCAGATGGAATGTATCCGCAAGTGGTGCTCGTCCCAATCCTCAAGGATCATTCAGATATGGCTCGATTAATGTTACCGATGTTTACGTCTTGCAAAATAAACCTCCCGTGTCAATCAGTGGCAAACAGAGAACAACGCTAAATGGAATCTCGTTTGTTAATCCATCCACACCAATCAGATTGGCTGACCAATTCAAGTTAAAGGGTGTTTATAAGCTCGACTTTCCCACTAGGCCACTTACAGGACCACCAAAGACAGAGACATCAGTGATTAATGGAACCTATAGAGGGTTTATGGAGATTGTACTGCAGAATAACGACACCAAGATGCAGAGCTATCACATGAACGGATACGCCTTCTTTGTCGTGGGGATGGACTATGGCGAGTGGACTGAGAATAGCAGGGGTACATACAATAAATGGGATGGAATAGCTCGCTCAACAATTCAGGTTTATCCGGGAGCATGGACAACCATCTTGATATCTCTCGACAATGTCGGAGTTTGGAACATCAGGACAGAAAATCTCGACTCATGGTATCTTGGGCAAGAGACATACGTTCGGGTTGTCAATCCTGAGGCGACTAACAAAACTGAACTGCCTATGCCAGACAATGCACTGTTTTGTGGTCAGCTTAGTAAATTACAGAAGCCACAAGATATCTCTTCTGCAACACCAATCATGGGCGGTAAATTGACGATGCTATTCACTCTGCTGACAATCTTCTCCACTGTAATATCGACTTTGCGCTAA 1827 42.86 MSLSSLNSCSTHPRFSGMAPIRNLFIFLLPICLFVTLSSAADPFAFFNFEVSYITASPLGVPQQVIAINGKFPGPPINVTTNNNVVINVRNKLDESLLMHWSGVQQRRSSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRASGGFGGIIINNRPIIPIPFATPDGDIVILIGDWYTRNHTALRKTLDDGKDLGMPHGVLINGKGPYRYNDTLVPDGIEHETIEVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKAAGPLPEAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLQNKPPVSISGKQRTTLNGISFVNPSTPIRLADQFKLKGVYKLDFPTRPLTGPPKTETSVINGTYRGFMEIVLQNNDTKMQSYHMNGYAFFVVGMDYGEWTENSRGTYNKWDGIARSTIQVYPGAWTTILISLDNVGVWNIRTENLDSWYLGQETYVRVVNPEATNKTELPMPDNALFCGQLSKLQKPQDISSATPIMGGKLTMLFTLLTIFSTVISTLR 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8374274 8381082 + CmoCh15G012080.1 Cmo15g01208 398716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01208 608 Gene3D - 380 578 IPR008972 -
Cmo15g01208 608 Pfam Multicopper oxidase 51 164 IPR011707 GO:0005507
Cmo15g01208 608 Pfam Multicopper oxidase 417 550 IPR011706 GO:0005507|GO:0016491
Cmo15g01208 608 SUPERFAMILY Cupredoxins 40 190 IPR008972 -
Cmo15g01208 608 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 29 579 - -
Cmo15g01208 608 Pfam Multicopper oxidase 177 330 IPR001117 -
Cmo15g01208 608 Gene3D - 175 368 IPR008972 -
Cmo15g01208 608 SUPERFAMILY Cupredoxins 171 370 IPR008972 -
Cmo15g01208 608 Gene3D - 38 163 IPR008972 -
Cmo15g01208 608 PANTHER MULTI-COPPER OXIDASE 29 579 IPR045087 -
Cmo15g01208 608 SUPERFAMILY Cupredoxins 397 569 IPR008972 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01208 - - - csv:101214991 1097.8
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01208 Cmo16g00204 CCT
Cmo15g01208 Cmo16g00204 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01208 Cmo-Chr15:8374274 Cmo15g01492 Cmo-Chr15:10109996 0 dispersed
Cmo18g00918 Cmo-Chr18:10360801 Cmo15g01208 Cmo-Chr15:8374274 2.59E-161 transposed
Cmo15g01208 Cmo-Chr15:8374274 Cmo16g00204 Cmo-Chr16:891310 0 wgd
Cmo15g01208 Cmo-Chr15:8374274 Cmo02g01596 Cmo-Chr2:9197195 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g496 . . . . . . Bma07g01605 . . . . Cma15g01148 . Car15g01043 . . . . . . . . . . . . . . . . . . . . . . Csa05g00396 Chy09g01117 . . Blo19g00222 . Bda09g00089 Bpe08g01440 . . . . . Cmo15g01208 . . . . . Cpe13g00220 . . . . . . . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 Lsi09g00399 . . Cme09g01647
Vvi16g429 Blo06g01090 Blo15g00133 . . . Bpe07g00978 . . Cmo16g00204 . . Cma15g01148 . . Sed01g4020 Cpe05g00708 Cpe14g00160 Bhi01g01216 Tan01g0390 Cmetu06g0404 . Hepe07g0250 Mch10g0250 . Cla01g00369 Cam01g0389 Cec01g0382 Cco01g0400 Clacu01g0388 Cmu01g0369 Cre09g2141 . . . . Lsi05g01323 Csa05g00396 Chy09g01117 Cme06g00894 . . Bda06g00744 . . . . Bma12g01160 . . Cmo15g01208 Cma16g00190 . Car16g00167 . . Cpe13g00220 . . . . . . . Cla05g00795 Cam05g0872 Cec05g0877 Cco05g0882 Clacu05g0863 Cmu05g0819 Cre05g0905 . Csa03g01616 Chy06g00853 Cme09g01647
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000359 4 3 4 4 4 4 5 4 4 4 5 4 5 4 4 5 4 6 5 4 4 4 4 4 4 5 4 8 5 2 130
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01208 Cmo_Chr15 FPKM 405.11261 448.904541 52.392555 49.539097 0.101392 0.0 0.108166 1.452451 1.271061 0.453067