Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01229 ATGGCGTCTACATCGCCGGCGGCTCCGGCAGTGGAGTCTGGGAGTTCCTCTGCGGATGAGGTGGCTGCGAAAGTCGTACACAAGCGATATGAAGGACTGGTGACGGTACGGACGAAGGCTATAAAGGGTAAAGGGGCTTGGTATTGGGCACACCTCGAACCTGTTCTCGTCCACTCCACTGACACTGGTTTGCCCAAGGCCGTTAAACTCCGGTGCTCCTTATGCGACGCCGTTTTCTCCGCCTCAAACCCATCTCGGACCGCCTCCGAGCATCTCAAACGCGGCACTTGCCCCAATTTCAACTCCCTGCCTAAACCCATTTCTTCTGTTTCCCCTTCCTCTTATCTAACGCCCACTTCCACTTCTCCGCCTCCTCTTCACCATAACAACCGCAAACGAACCTCCTCCGCCGCCGCTTGCGGCGGCGGAGGTGGAGTTGGAGGGTCTTCATACCAAGTCCCACCTCTTGCAATTGTGGATCCCTCGCGATTCTCTGGCGGAGGTGGCGGAGGTGGGGCTCTGTTGGCTCAGCAGCCGCATTTGATGTTATCTGGAGGGAAGGAGGATTTGGGGGCTCTGGCTATGTTGGAGGACAGTGTAAAGAAGCTGAAGAGTCCAAAAACTTCACCTGGGCCAACGCTGAGCAAGACCCAGATGGATTCCGCACTTGAATTTCTCACCGATTGGGTGTTCGAATCCGGCGGCTCTGTCTCATTTTCAAGCCTCGAACATCCCAAATTCAAGGCTTTTCTTAATCAAGTTGGAATACCCACAATCCCTCGCCGGGAGTTTAGAATTTCGCGACTGAATTCCAAATTCGAGGAAGCTAAAACAGAGTCCGAAGTTAAAATTCGAGACGCCATGTTTTTCCAGCTCGCCTCCGATGGGTGGAACGACAAAAACTACGCCCTTGTCGGAATCGACAAGCTTGTAAATCTCACCGTGAATCTCCCCAATGGGACAAGCTTGTACCGGCGAGCTGTATTCGTCACTGGCTCTGTTCCTTCCTCGTACGCGCAAGAAATCTTCTTGGAAACCATCGCTGATATCAGTGGCAATGTCGTTCAACAGTGTGTAGGGATTGTAGCAGACAAATTCAAGGCCAAGGCGCTGAAGAATTTGGAGAATCAACACAACTGGATGGTTAATCTCTCATGTCAGTTCCAGGGATTTTCCAGTTTGGTTAAGGATTTCAGCAAACAGCTCCCATTGTTCAAGACAACGACAGAGAATTGTATAAAGCTTGCTAATTTCGTTAACTACAACTCACAGATTCGTAATTCCTTCCATAAATTTCAGCTGCAAGAATACGGGCATGCGGCTTTGCTCCGAGTGCCACCCCGAGACCACGACAACCTCAAATTTGGGGCTGTCTTCACATTAATGGAAGACATTCTGAGCTACTCTCGAGCTCTGCAGCTGGTTGTGCTGGATGAGGCATGGAAAAATGGTTCCATGGAGGACCCAATTGGTAAAGAAGTGGGAGAGTTGATTGGGAATGTGGGGTTTTGGAATGAATTGGAGGCAGTTCATAGTTTGGTTAAATTGGTAAGAGAAATGGCTGCTGAGATAGAGACAGAGAGGCCACTGGTTGGGCAATGCCTTGGATTGTGGGATGAGCTGAGGGGGAAAGTGAAAGATTGGTGTTCAAAGTATGAGATTGGTGAAGGGAGTGTTGAGAAAGTGATTGAAAAGAGGTTCAAAAAGAACTACCACCCGGCATGGGCGGCGTCGTTTATACTCGATCCGTTGTATTTGATAAGGGAGAGGAGCGGGAAGTACCTGCCACCATTCAAATGCCTGAGCCCGGATCAAGAGAAGGACGTCGATAAGCTCATAACTCGGCTCGTGTCGAGGGAGGAAGCTCACATTGCATTGATGGAGCTAATGAAATGGAGGACAGAAGGGCTTGATCCAGTATATGCAAGAGCTGTACAAATGAAGGAAAGAGACCCTGTAAGTGGGAAGATGAGAGTGGCTAATCCACAAAGCAGTAGGCTTGTTTGGGAAACTTACCTTACAGAATTCAAGTCATTGGGCAAGGTTGCAGTGCGCCTCATATTCCTTCATGCCACTTCCTGTGGCTTCAAATGCAACTGGTCTTTGTTGAGATGGGTGTCTTCTCATTCTCATACTCACCAAAGCCCTGCTGCTATGGACATGGCACACAAGTTGATATTCATTTCGGCTCATTCCAAGCTCGACCGTAGGGACTTTTCCACCGACGAAGACAAGGATGCCGAGCTATTCTCCCTACCCAACGGCAACGACGACGATCATATGCTTAATCAAGTTTTCGCCGATTCCTCCTCGGTGTAA 2319 49.63 MASTSPAAPAVESGSSSADEVAAKVVHKRYEGLVTVRTKAIKGKGAWYWAHLEPVLVHSTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISSVSPSSYLTPTSTSPPPLHHNNRKRTSSAAACGGGGGVGGSSYQVPPLAIVDPSRFSGGGGGGGALLAQQPHLMLSGGKEDLGALAMLEDSVKKLKSPKTSPGPTLSKTQMDSALEFLTDWVFESGGSVSFSSLEHPKFKAFLNQVGIPTIPRREFRISRLNSKFEEAKTESEVKIRDAMFFQLASDGWNDKNYALVGIDKLVNLTVNLPNGTSLYRRAVFVTGSVPSSYAQEIFLETIADISGNVVQQCVGIVADKFKAKALKNLENQHNWMVNLSCQFQGFSSLVKDFSKQLPLFKTTTENCIKLANFVNYNSQIRNSFHKFQLQEYGHAALLRVPPRDHDNLKFGAVFTLMEDILSYSRALQLVVLDEAWKNGSMEDPIGKEVGELIGNVGFWNELEAVHSLVKLVREMAAEIETERPLVGQCLGLWDELRGKVKDWCSKYEIGEGSVEKVIEKRFKKNYHPAWAASFILDPLYLIRERSGKYLPPFKCLSPDQEKDVDKLITRLVSREEAHIALMELMKWRTEGLDPVYARAVQMKERDPVSGKMRVANPQSSRLVWETYLTEFKSLGKVAVRLIFLHATSCGFKCNWSLLRWVSSHSHTHQSPAAMDMAHKLIFISAHSKLDRRDFSTDEDKDAELFSLPNGNDDDHMLNQVFADSSSV 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8477099 8479417 - CmoCh15G012290.1 Cmo15g01229 398737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01229 772 MobiDBLite consensus disorder prediction 111 136 - -
Cmo15g01229 772 PANTHER F16P17.2 PROTEIN 10 767 - -
Cmo15g01229 772 PANTHER OSJNBA0013A04.12 PROTEIN 10 767 - -
Cmo15g01229 772 SUPERFAMILY Ribonuclease H-like 336 705 IPR012337 -
Cmo15g01229 772 MobiDBLite consensus disorder prediction 111 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01229 - - - csv:101211194 1245.72
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01229 Cmo16g01085 CCT
Cmo15g01229 Cmo16g01085 ECH
Cmo02g01548 Cmo15g01229 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01025 Cmo-Chr2:6229138 Cmo15g01229 Cmo-Chr15:8477099 0 dispersed
Cmo15g01229 Cmo-Chr15:8477099 Cmo15g01445 Cmo-Chr15:9809452 0 dispersed
Cmo15g01229 Cmo-Chr15:8477099 Cmo16g01085 Cmo-Chr16:7675800 0 wgd
Cmo15g01229 Cmo-Chr15:8477099 Cmo02g01548 Cmo-Chr2:8970023 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g477 Blo02g01065 . . . Bpe05g00602 . Bma07g01615 Bma14g00563 . Cmo16g01085 . Cma15g01167 Car02g01269 Car15g01056 . Cpe14g00858 . . . . . . . . . . . . . . . . . . . Lsi07g01349 . Chy09g01140 Cme06g02636 . . Bda07g00519 Bda09g00079 Bpe08g01450 Bpe11g00706 . . . Cmo02g01548 Cmo15g01229 . Cma16g01039 . Car16g00989 . . Bhi12g00575 . . . . . . . . . . . . . . Csa03g00324 Chy06g02000 Cme09g01671
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005683 3 1 1 2 2 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01229 Cmo_Chr15 FPKM 5.39785 4.509526 3.934733 4.326744 21.174 20.2642 23.270931 1.092224 0.0 0.0