Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01233 ATGGCAGTCTCTTCTGCTCAGAGTCTTCAACCTCAGATTAATGTTTCCCAGCCTTCTCTCAGCGTTGCGACGAAGGTTTTCTCGGGACTGAAGCTTCAATCTGCTAGTCCATTCGGAGGAGCAAAACCTAATATTACTACTGAATTCTATGGAAAAGTTCATAAAAGTCTACAAGCCAGAGTGCCTGACGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTATATCGAGAACGAGTTGTCTTCATTGGGCTGAACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCCACAATACTATATCTTGACAGCATTGAAACTTCCAAAAAACTCTACATGTACATAAATGGCCCAGGTGGAGATCTAACTCCAAGTATGGCCATCTACGACACAATGCAGAGCTTGCAGAGTCCTGTAGCTACTCATTGCGTTGGTTATGCCTATAATCTAGCAGCCTTTCTTTTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCCATGCCTCTATCAAGAATTGCTTTGCAACCCCCTTCCGGAGCTGCACGTGGCCAGGCTGATGACATTCGAAATGAAGCAAACGAGCTCTTGAGAATCAGGGATTATCTTTATGATGAGCTTTCTAAAAAAACAGGCCAGCCTGTTTAA 645 44.19 MAVSSAQSLQPQINVSQPSLSVATKVFSGLKLQSASPFGGAKPNITTEFYGKVHKSLQARVPDEGTWQWVDLWNALYRERVVFIGLNVDEEFSNQILATILYLDSIETSKKLYMYINGPGGDLTPSMAIYDTMQSLQSPVATHCVGYAYNLAAFLLAAGEKGNRSAMPLSRIALQPPSGAARGQADDIRNEANELLRIRDYLYDELSKKTGQPV 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8492964 8496355 + CmoCh15G012330.1 Cmo15g01233 398741

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01233 214 PRINTS Clp protease catalytic subunit P signature 111 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo15g01233 214 PRINTS Clp protease catalytic subunit P signature 71 86 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo15g01233 214 PRINTS Clp protease catalytic subunit P signature 142 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo15g01233 214 PRINTS Clp protease catalytic subunit P signature 163 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo15g01233 214 CDD S14_ClpP_2 71 214 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cmo15g01233 214 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 5 214 - -
Cmo15g01233 214 SUPERFAMILY ClpP/crotonase 64 213 IPR029045 -
Cmo15g01233 214 Pfam Clp protease 68 213 IPR023562 -
Cmo15g01233 214 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 5 214 IPR023562 -
Cmo15g01233 214 Gene3D - 52 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01233 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101210460 349.747
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01233 Cmo16g01198 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01233 Cmo-Chr15:8492964 Cmo14g00959 Cmo-Chr14:5112847 7.32E-35 dispersed
Cmo15g01233 Cmo-Chr15:8492964 Cmo02g01550 Cmo-Chr2:8979489 3.04E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01233 Cmo_Chr15 FPKM 0.0 2.718982 1.96129 2.40237 2.862694 5.424868 3.224779 2.275357 3.188379 1.362076