Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01234 ATGGAGGGAAGGGACGGTGGTGCAAGTAGTGGGGTTACTGTAGTCGGATCAGATGCTCCGTCCAAGTACCAAATAGCTCCCAGGACCTCCGGTAGCCCGCCGCAGACCGGTGGATCAACGCTGCCACCGGCGACTCAACCAACTTCCACGCCGTCGGCCTCGGCGCAGGTACCTGCGCAGCCTACGCCACCCACGGCGGCCTCCTCTGTTCCGGGAAAGAAGAAAAGAGGGAGGCCGAGAAAATATGGACCCGATGGCTCTGTTAATATGGCTCTGTCTCCCAAGCCGATATCGTCATCGGTGCCGCCGCCGGTGATTGACTTCTCGGCGGAGAAGAGGGGGAAAGTCCGGCCGGCAAGCGGTGTGAACAAAACCAAATTCGAAGTGGATAATTTAGGTAATGGGAGTGGATGCGATTGGGTGGTTCCATGTTCTGTTGGTGCAAATTTTACGCCTCATATCATCACTGTCGATGCGGGCGAGGATGTTACGATGAAGATAATATCGTTTTCTCAACAAGGGCCTCGAGCGATATGCGTTTTATCTGCTAATGGTGTGATCTCGAGTGTCACTCTTCGTCAGCCTGATTCGTCTGGAGGAACATTAACATATGAGGGTCGATTTGAAATACTATCCTTATCTGGCTCGTTCATGCCGAGTGACAATGGAGGAACTAGAAGTAGATCGGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGACGGGCGTGTCGTAGGCGGTGGAGTTGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTTTCTGGAAACCAACATGAGCAGAAACCTAAAAAGCCAAAACAAGATACTAATTCAACTGCTCCGCCAACTGCTGCCATTCCAATATCTTGCGTCGACCCTAAGGCGAACCTCTCGCCGTCCAGTCCCTTTCGTGGCGATAACTGGTCGACGCTGCCAACCGATTCGAGGAATAATAAGCCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 1011 51.93 MEGRDGGASSGVTVVGSDAPSKYQIAPRTSGSPPQTGGSTLPPATQPTSTPSASAQVPAQPTPPTAASSVPGKKKRGRPRKYGPDGSVNMALSPKPISSSVPPPVIDFSAEKRGKVRPASGVNKTKFEVDNLGNGSGCDWVVPCSVGANFTPHIITVDAGEDVTMKIISFSQQGPRAICVLSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKQDTNSTAPPTAAIPISCVDPKANLSPSSPFRGDNWSTLPTDSRNNKPTDINVSLPSA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8497053 8499385 - CmoCh15G012340.1 Cmo15g01234 398742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01234 336 MobiDBLite consensus disorder prediction 267 336 - -
Cmo15g01234 336 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 269 - -
Cmo15g01234 336 MobiDBLite consensus disorder prediction 300 336 - -
Cmo15g01234 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 334 - -
Cmo15g01234 336 MobiDBLite consensus disorder prediction 1 106 - -
Cmo15g01234 336 Gene3D - 152 281 - -
Cmo15g01234 336 ProSiteProfiles PPC domain profile profile. 147 288 IPR005175 -
Cmo15g01234 336 CDD DUF296 151 242 IPR005175 -
Cmo15g01234 336 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 334 IPR039605 GO:0003680
Cmo15g01234 336 MobiDBLite consensus disorder prediction 23 67 - -
Cmo15g01234 336 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 265 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01234 Cmo16g01081 CCT
Cmo06g01158 Cmo15g01234 CCT
Cmo15g01234 Cmo16g01081 ECH
Cmo06g01158 Cmo15g01234 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01234 Cmo-Chr15:8497053 Cmo15g01444 Cmo-Chr15:9798955 4.65E-78 dispersed
Cmo14g02040 Cmo-Chr14:14913849 Cmo15g01234 Cmo-Chr15:8497053 2.62E-99 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo16g01081 Cmo-Chr16:7648276 4.72E-124 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo18g01215 Cmo-Chr18:12076006 1.51E-92 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo02g01551 Cmo-Chr2:8983157 4.09E-180 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo06g00770 Cmo-Chr6:4004220 9.47E-111 wgd
Cmo15g01234 Cmo-Chr15:8497053 Cmo06g01158 Cmo-Chr6:8884280 4.67E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01234 - - csv:101210208 508.064