Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01236 ATGGATGCTCACTCCCTTCCTCCTCCCTTCCACACCCGAGATTTCCATCTCCAGACTCCGTTTCACCACAACAACAACAACCACAACAATAACAATTCCGAAGAGGAACATAGCGCCACCACCAGCCGTCTCAAGCGTGATCGCGACGACGACCATCATCCCAACAACTCCGCCCCCAACAGCGGTGGAGATCCCGACGGAGAAATCACCCGTCGCCCTAGAGGCAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCTATTATCATTACTCGTGACAGTGCCAACGCCCTTCGGACCCATGTCATCGAGGTCACCGATGGCTGCGACATCGTCGACAGTGTTGCTACCTTCGCTCGCCGCCGACAGCGTGGCGTTTGTATCATGAGCGGTACCGGCACAGTCACCAACGTCACTCTCCGCCAACCCGCCTCCCCCGGTGCAATTGTCAACTTACACGGTCGTTTCGAGATCTTGTCCCTTGCCGGGTCTTTCCTCCCTCCTCCGGCTCCTCCTGCCGCTACCACCTTAACCATTTACCTCGCCGGTGGTCAGGGCCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCCGGCCCTGTCGTCATCATGGCTGCCTCGTTTAGTAACGCTGCTTATGAACGGCTCCCGTTGGAGGAGGACGACCAGCCGCCACTTCCGTCGATGCAAGGCGGCGGCGGAATTGGGTCTCCCGATGAAATTGGACAGCCCCAACAACAGCAGCAACTCGTCGGCGACGGAAATGGGCCGTTGTTTCAAGGTTTGCCTCCGAATCTGCTAAATTCAATTCAAATGCCACCATCGGAAGCAGCTTATTGGGCAAATTCCCGTCCACCGTACTAA 870 56.55 MDAHSLPPPFHTRDFHLQTPFHHNNNNHNNNNSEEEHSATTSRLKRDRDDDHHPNNSAPNSGGDPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPPLPSMQGGGGIGSPDEIGQPQQQQQLVGDGNGPLFQGLPPNLLNSIQMPPSEAAYWANSRPPY 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8513916 8514785 + CmoCh15G012360.1 Cmo15g01236 398744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01236 289 MobiDBLite consensus disorder prediction 19 37 - -
Cmo15g01236 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 289 IPR014476 GO:0003680
Cmo15g01236 289 MobiDBLite consensus disorder prediction 221 269 - -
Cmo15g01236 289 CDD DUF296 99 165 IPR005175 -
Cmo15g01236 289 MobiDBLite consensus disorder prediction 242 256 - -
Cmo15g01236 289 MobiDBLite consensus disorder prediction 38 55 - -
Cmo15g01236 289 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 226 - -
Cmo15g01236 289 PIRSF ESCAROLA 11 289 IPR014476 GO:0003680
Cmo15g01236 289 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Cmo15g01236 289 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Cmo15g01236 289 MobiDBLite consensus disorder prediction 1 90 - -
Cmo15g01236 289 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 3 289 - -
Cmo15g01236 289 Gene3D - 98 228 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01155 Cmo15g01236 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00918 Cmo-Chr8:5986572 Cmo15g01236 Cmo-Chr15:8513916 7.19E-79 dispersed
Cmo15g01236 Cmo-Chr15:8513916 Cmo17g00030 Cmo-Chr17:135628 7.54E-87 dispersed
Cmo15g01236 Cmo-Chr15:8513916 Cmo02g01554 Cmo-Chr2:9006756 1.59E-150 wgd
Cmo15g01236 Cmo-Chr15:8513916 Cmo06g01155 Cmo-Chr6:8855557 6.57E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01236 - - csv:101209716 454.136