Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01237 ATGGCCGCTTCTGGGGGTACTAGTAATAGAAATGGTGCCAATTCCAGAAACTCTCTTAAGCTTGATAAGCCCTTTTCTCCTAATTCCAACCCCAATTCTTCTCTTAAGTCAAAGTCTCTTCCCAATTCTGCTCTGAGACGCAGTAGCCCTGCATCTCTTGGTGCTGCCAAGAATGATGGTGGAGTTCCTGGAAGAGTTCGAGTAGCTGTTAGATTGCGACCACGCAATTCAGAAGAATTGATAGCTGATGCTGATTTTGCTGATTGCGTAGAATTACAGCCAGAGCTTAAAAGGTTGAAACTCCTGAAGAACAACTGGGATTCAGATACTTATGAGTTTGATGAAGTGCTAACTGAGTTTGCATCTCAAAAACGTGTTTATGAAGCCGTGGTGAAACCTGTTGTGGAGAGTGTATTGGATGGCTACAATGGAACAATTATGGCATATGGACAGACTGGTACTGGCAAAACGTATACTCTTGGAGGACTTGGAGAGGAAGACACGGCTGATCGTGGAATAATGGTGCGTGCTATGGAGGACATCTTGGCTGAAGTTTCTTTGGAGACGGATTCTGTCACGGTATCCTACCTGCAGCTTTATATGGAGAGCATACAGGACCTGCTTGACCCTGCAAATGATAACATTTCCATTGTTGAAGATCCTAAAACGGGAGATGTTTCGTTACCTGGGGCTAGCCTGGTAGAAATCAGACACCAGGAGAGCTTTGTGGAACTACTAAGATTGGGGGAAGCTCATCGTTTTGCTGCGAATACGAAACTAAACACTGAATCTTCTCGTAGTCATGCAATTCTCATGGTACATGTAAAGCGGTCTTTGAAGGGAAGGGATTCAACTCTGGGAAGTGATGTTGGTGGGCATTCTCATTTGGTTAAGACCTTGAAAGCTCCTATTGTTCGGAAGGGAAAGTTAGTGGTGGTGGATCTTGCTGGAAGTGAAGGACATACACTTGAAGAAGCCAAATCCATAAATCTCTCCCTGAGTGCATTAGGGAAGTGCATAAATGCACTAGCTGAGAATAGTGCACACGTTCCAGTTAGGGATTCAAAGCTTACAAGGTTACTCCGGGATTCATTTGGTGGAACAGCTAGAACTTCACTGGTTATTACTATTGGTCCTTCACCTCGCCATCGTGGAGAGACTACAAGCACAATAATGTTTGGCCAACGGGCTATGAAGGTGGAAAATATGGTGAAGATAAAAGAAGAATTTGATTATAAAAGTTTGTCAAGAAGATTAGACATTCAATTAGACAAACTGATAGCCGAACATGAAAGACAGAAGAAATCATTTGAGATGGAAATTGAAAGAATTACCAAAGAAGCACAGGATCGCATATCTGAAGCTGAAAGAAGTCATTCGAACGCACTGGAGGGTTCGGTTGAGTGTGCTGATAAGGAAGTTGAGGAGCTAAAGAATTTGGTTAAAAAGGAAACGCTTTTGAGGAAGGCAGCTGAAGAGGAAGTTAGCAATCTTAGAACTCAAGTAGCCCAACTGAAGAGATCAGAGACATCTTGCAATTTGGAAATCTCTAAGCTTTGCAAGTCTCTGGAAGATGAGCAAAATCAGAAAAGGAAACTAGAAGGAGATATAGCTGTTCTACAGACCCAGTTGTTGCAATTGAGCTTTGAAGCTGATGAGACCAGTAGGCGACTGGACAGAGGTGAGCCTGGGAAAGTCCTCGGTTCTATAGATTCTCAAGTGCAACAAGTTAAGCACTCACAGGCTCAGGAGCCTGGAAATGGGGAGAAAGCTTCAAAGATCTTGTCGTTGCTGGAAGCTGAAGATTATGACGTCAGAATTCATGCTGTGAAAGTGGTTGCAAATCTAGCAGCTGAAGAAACAAATCAGCAAAAGATTGTAGAGGCTGGCGGCCTTTCATCCTTGCTGATGCTACTCAGAAACACAGAGGATGAGACAATACACAGAGTTGCTGCTGGGGCAATTGCAAATCTGGCAATGAATGAGACCAACCAAGAGCTCATTATGTCCCAAGGGGGCATTAGCTTACTGTCCATCACGGCTGCCAACGCTGAGGATCCCCAAACCCTTCGTATGGTTGCCGGAGCAATCGCCAATTTGTGCGGCAATGATAAGTTGCAGAAGAAGTTAAGGGGCGAAGGTGGTATCAAGGCATTGCTTGGGAGCAAGGCTGGAAAGTCTTTCTTGATTGAAGATGGAGCACTCCCATGGATTGTACAGAATGCCAACAATGAAGCATCAACGATCAAACGACATATCGAACTGGCACTCTGTCATTTAGCACAACATGAAGTGAACGCAAGGGACATGATGAATGGAGGTGCAGTGTGGGAACTGGTTCGGATATCGCGGGACTGCTCACGGGAAGACATAAGGAGTCTTGCGCATCGAACGTTAATATCCAGCCCCACATTTCAAGCTGAAATGAGACGATTACGAATAGATCATTGA 2451 44.39 MAASGGTSNRNGANSRNSLKLDKPFSPNSNPNSSLKSKSLPNSALRRSSPASLGAAKNDGGVPGRVRVAVRLRPRNSEELIADADFADCVELQPELKRLKLLKNNWDSDTYEFDEVLTEFASQKRVYEAVVKPVVESVLDGYNGTIMAYGQTGTGKTYTLGGLGEEDTADRGIMVRAMEDILAEVSLETDSVTVSYLQLYMESIQDLLDPANDNISIVEDPKTGDVSLPGASLVEIRHQESFVELLRLGEAHRFAANTKLNTESSRSHAILMVHVKRSLKGRDSTLGSDVGGHSHLVKTLKAPIVRKGKLVVVDLAGSEGHTLEEAKSINLSLSALGKCINALAENSAHVPVRDSKLTRLLRDSFGGTARTSLVITIGPSPRHRGETTSTIMFGQRAMKVENMVKIKEEFDYKSLSRRLDIQLDKLIAEHERQKKSFEMEIERITKEAQDRISEAERSHSNALEGSVECADKEVEELKNLVKKETLLRKAAEEEVSNLRTQVAQLKRSETSCNLEISKLCKSLEDEQNQKRKLEGDIAVLQTQLLQLSFEADETSRRLDRGEPGKVLGSIDSQVQQVKHSQAQEPGNGEKASKILSLLEAEDYDVRIHAVKVVANLAAEETNQQKIVEAGGLSSLLMLLRNTEDETIHRVAAGAIANLAMNETNQELIMSQGGISLLSITAANAEDPQTLRMVAGAIANLCGNDKLQKKLRGEGGIKALLGSKAGKSFLIEDGALPWIVQNANNEASTIKRHIELALCHLAQHEVNARDMMNGGAVWELVRISRDCSREDIRSLAHRTLISSPTFQAEMRRLRIDH 816
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8515444 8523790 - CmoCh15G012370.1 Cmo15g01237 398745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01237 816 Coils Coil 427 447 - -
Cmo15g01237 816 ProSiteProfiles Kinesin motor domain profile. 65 400 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Cmo15g01237 816 PANTHER KINESIN-RELATED 737 808 IPR027640 GO:0003777|GO:0007018
Cmo15g01237 816 PANTHER KINESIN-RELATED 471 718 IPR027640 GO:0003777|GO:0007018
Cmo15g01237 816 PANTHER KINESIN-RELATED 47 465 IPR027640 GO:0003777|GO:0007018
Cmo15g01237 816 Coils Coil 460 508 - -
Cmo15g01237 816 PRINTS Kinesin heavy chain signature 141 162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 PRINTS Kinesin heavy chain signature 350 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 PRINTS Kinesin heavy chain signature 258 275 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 CDD KISc 65 398 - -
Cmo15g01237 816 Coils Coil 516 543 - -
Cmo15g01237 816 PANTHER KINESIN-LIKE PROTEIN KIN-UA 471 718 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cmo15g01237 816 Pfam Kinesin motor domain 71 400 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 MobiDBLite consensus disorder prediction 1 60 - -
Cmo15g01237 816 ProSitePatterns Kinesin motor domain signature. 308 319 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo15g01237 816 PANTHER KINESIN-LIKE PROTEIN KIN-UA 737 808 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cmo15g01237 816 PANTHER KINESIN-LIKE PROTEIN KIN-UA 47 465 IPR033291 GO:0008017|GO:0032886|GO:0048364
Cmo15g01237 816 SMART kinesin_4 63 408 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo15g01237 816 Pfam Armadillo/beta-catenin-like repeat 622 659 IPR000225 GO:0005515
Cmo15g01237 816 SMART arm_5 661 702 IPR000225 GO:0005515
Cmo15g01237 816 SMART arm_5 618 660 IPR000225 GO:0005515
Cmo15g01237 816 Gene3D - 565 802 IPR011989 -
Cmo15g01237 816 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 438 IPR027417 -
Cmo15g01237 816 Gene3D Kinesin motor domain 58 431 IPR036961 -
Cmo15g01237 816 MobiDBLite consensus disorder prediction 1 49 - -
Cmo15g01237 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 673 IPR000225 GO:0005515
Cmo15g01237 816 SUPERFAMILY ARM repeat 593 799 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01237 - - K10396 csv:101209471 1329.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00516 Cmo-Chr15:2400466 Cmo15g01237 Cmo-Chr15:8515444 3.55E-69 dispersed
Cmo15g01237 Cmo-Chr15:8515444 Cmo01g00601 Cmo-Chr1:3050493 7.94E-58 dispersed
Cmo14g02046 Cmo-Chr14:14947592 Cmo15g01237 Cmo-Chr15:8515444 0 wgd
Cmo15g01237 Cmo-Chr15:8515444 Cmo02g01555 Cmo-Chr2:9009329 0 wgd
Cmo15g01237 Cmo-Chr15:8515444 Cmo06g01154 Cmo-Chr6:8839688 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g464 . . . . . . . . . . . Cma15g01176 . Car15g01064 . . . . . . . . . . . . . . . . . Cone8ag0352 . . . . . Chy09g01147 . . . . . . . . . . . Cmo15g01237 . . Car06g00966 . . . Bhi12g00358 . . . . . . . . . . . . . . . . Cme09g01679
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001054 3 5 3 2 3 2 5 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 3 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo15g01237 Cmo_Chr15 FPKM 2.63963 2.322511 0.883845 1.328607 3.08516 3.668524 3.545287 0.293258 0.497537 0.191816