Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo15g01239 ATGACCCAGAGTCGATTATTCCGGACGCGCAATTCTAAAACTGACGAAGAAGCAGAAGCCACCACTAGCTGTGGTGGAAGAGCCGCCATGAGAGTCGTAGTACCTCTGCAAAGCGTCGTTCAAGGAAGAGGCGGCGTTGTTTTGGGCTCTGTTATACCGTGCGTTCTTTTCTACTTTCTTCAGCTCTACTTGAAACGAAATCGGTCAGACCAGACCCGGGACTCTCCGCCGTCGCCGGAGGCGGATTCTTCGGGGAACTCATCGTTATCGTCGAGTAATCAGTTAGTGGAGCTCTCTGTGCTGCCTCGAACATTGTCTCGGACCTTCCTCTCGCCGAGGTCGAGCGGGCATGTTTGCGTTTCGGGTCGGGCTAATTCGATTGCTAGAATTGGGGATTCTCCGATTTTCGTTGGAATGAGGAGGTTCTTGGAGGACTCATTTGACGAATTGGATAATCCGACAGGGATTATTCAGCTATCTGTTGCTGAGAATAAGTTATCCTCCGACTTGGTGCAAAATTGGCTGACGGAGAATGGAAGGGATGCTATATTTGGAGGAGGGAATCATAATGAGCTGAGTGTAGCTGGGACTGTTCGTTACCAGCCTTCAGATGGATTGCCGGATTTGAAACTGGCTGTGGCAAGTTTCATGTCTCAAGCTGTAGGGAACTCTGTCTCATTCATCCCTTCACAATTAGTATTAACAACTGGAGGGACCTCTGCAATTGAAACACTTTGCTTTTGCATAGCTGACCCAGGACAAGCGTTTCTCGTTCCAACGCCATATTACCCGGGGTACTTGTTCATCCTCTATCATGATATTTTCATCTACAAAACTTATATTCTAAATCACAAACGCAGTCTCGACAACGATGTAAAGTGTCGAACTGGGGTGGAGATAGTACCAGTTCCGTGTCGCAGTACCGATAACTTCAGTTTAAGCACAACTTCTCTTGATCGAGCGTTCCACCAGGCAAGGAATCGCGGCCTTAAAGTTCGTGGAATTATAATCTCAAATCCTTCAATTCCAGTTGGAAACCAGCTACCAAGAGAAACACTCTACAACCTTTTGGAGTTTGCCAGGGAGAAAAACATCCATATAATATCAAATGAAACACTTGTAGGATCAAGTTATGGAAGTGAAGAATTCGTGAGCATGGCTGAAATGATCGACTTAGACGATAGCGATCAAGATCGAGTACATATTACATATGATCTATCCGAAGACATGTCACTTCCTGGTTTCAGAGTTGCTGCAATCTACTCTTCGAACGAAAATATCCTGGCTGCTGCTAGAAAACTGGCAAGGTTCTCATCTGTTTCTTCCATAACCCAGAACCTCCTTTCTTCTATGCTCTCAGATAAGCAATTCATCCAGAGGTTCATTCGGATCAGTCGAGAGAGGCTTGGAGAAACGAATCGTAAATTTGCTGCAGGGCTGAAGGAACTCGACATCAAATGTATCAAGAGCAATGGAGGTTTCTACTGCTGGGCAGATATGAGCAAGCTAATCGGCTCGTACAGCGAGAAAGGCGAACTTGAGCTCTGGGAAAAGCTGTTGGATATAGGTAAAGTTAATCTTACCCCTGGCTCTAGCTGTAGTTGTATTGAACCAGGATGGTTTGGATTCTGTTTTACAACTTTGATTGATAACGAAATACCTATCGTTATGGACCGAATTCGAAAAATTTCCAAAGCATGTACTAAAGCAATGAAACAAGCAAGACTAGCAACCCTGATGATAATCAACCATTTGGGAAGAGTCAAATGGAACATTGAGGACCTTGAGGTGAGCCCATACTGA 1803 45.15 MTQSRLFRTRNSKTDEEAEATTSCGGRAAMRVVVPLQSVVQGRGGVVLGSVIPCVLFYFLQLYLKRNRSDQTRDSPPSPEADSSGNSSLSSSNQLVELSVLPRTLSRTFLSPRSSGHVCVSGRANSIARIGDSPIFVGMRRFLEDSFDELDNPTGIIQLSVAENKLSSDLVQNWLTENGRDAIFGGGNHNELSVAGTVRYQPSDGLPDLKLAVASFMSQAVGNSVSFIPSQLVLTTGGTSAIETLCFCIADPGQAFLVPTPYYPGYLFILYHDIFIYKTYILNHKRSLDNDVKCRTGVEIVPVPCRSTDNFSLSTTSLDRAFHQARNRGLKVRGIIISNPSIPVGNQLPRETLYNLLEFAREKNIHIISNETLVGSSYGSEEFVSMAEMIDLDDSDQDRVHITYDLSEDMSLPGFRVAAIYSSNENILAAARKLARFSSVSSITQNLLSSMLSDKQFIQRFIRISRERLGETNRKFAAGLKELDIKCIKSNGGFYCWADMSKLIGSYSEKGELELWEKLLDIGKVNLTPGSSCSCIEPGWFGFCFTTLIDNEIPIVMDRIRKISKACTKAMKQARLATLMIINHLGRVKWNIEDLEVSPY 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 8531776 8536271 - CmoCh15G012390.1 Cmo15g01239 398747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo15g01239 600 MobiDBLite consensus disorder prediction 69 93 - -
Cmo15g01239 600 SUPERFAMILY PLP-dependent transferases 132 563 IPR015424 -
Cmo15g01239 600 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 399 423 - -
Cmo15g01239 600 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 159 185 - -
Cmo15g01239 600 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 231 251 - -
Cmo15g01239 600 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 431 454 - -
Cmo15g01239 600 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 253 274 - -
Cmo15g01239 600 PANTHER AMINOTRANSFERASE ACS12-RELATED 287 566 - -
Cmo15g01239 600 PANTHER AMINOTRANSFERASE ACS12-RELATED 20 266 - -
Cmo15g01239 600 MobiDBLite consensus disorder prediction 76 93 - -
Cmo15g01239 600 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 287 566 - -
Cmo15g01239 600 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 20 266 - -
Cmo15g01239 600 Gene3D - 179 454 IPR015421 GO:0003824
Cmo15g01239 600 Pfam Aminotransferase class I and II 163 560 IPR004839 GO:0009058|GO:0030170
Cmo15g01239 600 MobiDBLite consensus disorder prediction 1 22 - -
Cmo15g01239 600 Gene3D Aspartate Aminotransferase, domain 1 145 559 IPR015422 GO:0003824
Cmo15g01239 600 CDD AAT_like 195 562 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g01239 Cmo18g01218 CCT
Cmo15g01239 Cmo18g01218 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01239 Cmo-Chr15:8531776 Cmo16g00789 Cmo-Chr16:3999053 3.75E-121 dispersed
Cmo02g01559 Cmo-Chr2:9027622 Cmo15g01239 Cmo-Chr15:8531776 0 transposed
Cmo02g01560 Cmo-Chr2:9028909 Cmo15g01239 Cmo-Chr15:8531776 4.09E-22 transposed
Cmo15g01239 Cmo-Chr15:8531776 Cmo18g01218 Cmo-Chr18:12098474 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo15g01239 K14270 - csv:101208573 914.835